Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N03
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +2

Query: 755 PAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXP 856
           PAP    P       PP  P PP    +  PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/61 (24%), Positives = 16/61 (26%)
 Frame = +1

Query: 649 PXSXPPXGXXRXSPXXXGKXPXXXXXXPQXAXXXGPXPPXHXALXXXXLXPPGXPRPPXX 828
           P S PP       P      P      P         PP    +      PP  P PP  
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479

Query: 829 P 831
           P
Sbjct: 480 P 480


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +2

Query: 755  PAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAPXGXP 907
            P P  T P        P  P P    +S  P  P     G  P  AP G P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP--APSGAPPVPAPSGIP 1092



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/59 (28%), Positives = 17/59 (28%)
 Frame = +2

Query: 731  PXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAPXGXP 907
            P  P      P    P        P   APP    S  PP P        P  AP G P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK-PSVAAPPVPAPSGAP 1159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,148
Number of Sequences: 5004
Number of extensions: 14758
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)