Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_N03
(983 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 31 1.9
12_02_0299 - 17051570-17052474,17053542-17053755 30 3.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.3
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 30 3.3
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 5.7
09_02_0543 + 10427321-10428315,10428440-10429154 28 9.9
06_03_1310 + 29238644-29240260 28 9.9
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/51 (29%), Positives = 18/51 (35%)
Frame = +2
Query: 755 PAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAPXGXP 907
PAP+ P PP P+PP + PP P P P P
Sbjct: 570 PAPQAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPPAMP 620
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +2
Query: 641 TPXRXPXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAP 820
TP P L P P P P P P P F PP P P
Sbjct: 233 TPPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPP 292
Query: 821 P 823
P
Sbjct: 293 P 293
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +2
Query: 755 PAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAPXGXP 907
P P P PP P PP N PP P + P P P
Sbjct: 621 PPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPP 671
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +2
Query: 731 PXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAP 895
P P PA R P PP PA N PP P + + P P
Sbjct: 712 PPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPP 766
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = +2
Query: 752 GPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAPXGXP 907
GP + P + P P PP NS PP P P P P
Sbjct: 75 GPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPP 126
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +2
Query: 686 PQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXP 847
PQ P P P P P T P PP P PP S P
Sbjct: 415 PQSPPPPLPSDAFEQPPPPPEHPPPPESTSPPPPPTSDPPPVPPPPPTTGSFMP 468
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 740 PXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXP 856
P P P T P PP P PP NS PP P
Sbjct: 60 PPASPPLPSATPPLAAS---PPPPPPPPPPRNSPSPPKP 95
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 28.3 bits (60), Expect = 9.9
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +2
Query: 740 PXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAPXGXPXAG 916
P PAP+ T P PP PAP + PP P AP P G
Sbjct: 15 PPRPTPAPQATPPPAIPESGPPPPPAP----DMPPPPPTPAPQSSPAPPPAPDMTPPPG 69
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/63 (23%), Positives = 18/63 (28%)
Frame = +1
Query: 649 PXSXPPXGXXRXSPXXXGKXPXXXXXXPQXAXXXGPXPPXHXALXXXXLXPPGXPRPPXX 828
P + P G P P PQ P PP H PP + P
Sbjct: 461 PPTTTPPGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSGDKLPFP 520
Query: 829 PQF 837
P +
Sbjct: 521 PVY 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,306
Number of Sequences: 37544
Number of extensions: 208844
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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