Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_N03
(983 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 32 0.72
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 31 1.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 2.2
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 2.2
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 30 2.9
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.8
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 29 5.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.1
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 5.1
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 29 5.1
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 6.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 6.7
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 6.7
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 6.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 6.7
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 6.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.9
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.72
Identities = 22/79 (27%), Positives = 23/79 (29%)
Frame = +2
Query: 671 GXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPP 850
G G P P P P GP P PPG P PP PP
Sbjct: 183 GQDGVPGLPGPPGPSGPQGAPGVPGEKGPTGE---PGKVINGAPPGPPGPPGPPGPQGPP 239
Query: 851 XPXVXXXGRXPXXAPXGXP 907
P G+ P G P
Sbjct: 240 GPP-GKDGQPGKAGPPGLP 257
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = -3
Query: 822 GGAGXPGGXKXXXXXGXVXRGAGPXXXGXLGXXXXXXRXFSXGXWGXPGXPPXRXGXRXG 643
GG G PGG G + GP G G + G G PG P G G
Sbjct: 95 GGLGTPGGPGNPGGPGGLGTPGGPGTPGGPGNPGGLGGPGNPGGPGTPGGPGTPGGQPHG 154
Query: 642 VA 637
A
Sbjct: 155 TA 156
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP-XXH 832
P G PG P P + P P P P PPG P PP
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPG 163
Query: 833 NSXXPPXPXVXXXGRXP-XXAPXGXP 907
+S P P + P P G P
Sbjct: 164 DSGEPGSPGLPGQDAAPGEPGPKGPP 189
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP-XXH 832
P G PG P P + P P P P PPG P PP
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPG 163
Query: 833 NSXXPPXPXVXXXGRXP-XXAPXGXP 907
+S P P + P P G P
Sbjct: 164 DSGEPGSPGLPGQDAAPGEPGPKGPP 189
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +2
Query: 671 GXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXP 847
G PG P P P P GPA P PG P PP P
Sbjct: 172 GPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRGEPGTEYKPGQPGRPGPPGPRGEAGP 230
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/82 (25%), Positives = 21/82 (25%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHN 835
P GG PG P P P P P PG P PP
Sbjct: 108 PPGAGGTPGKPGRPGAPGAWGMPGNPGKGGSGPCHPVVPTPCKPCPGGRPGPPGPPGRPG 167
Query: 836 SXXPPXPXVXXXGRXPXXAPXG 901
S P G P P G
Sbjct: 168 SDGQPGRPATGGGAAPRPGPPG 189
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Frame = +2
Query: 740 PXXXGPAPRXTXPXXXXXFXPPGXPA---PPXXHNSXXPPXPXVXXXGRXPXXAPXGXPX 910
P P R P PP P+ PP PP P + G P P P
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 357
Query: 911 AG 916
AG
Sbjct: 358 AG 359
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = +1
Query: 649 PXSXPPXGXXRXSPXXXGKXPXXXXXXPQXAXXXGPXPPXHXALXXXXLXPPGXP-RPPX 825
P PP R P G P + P PP + PP P RPP
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 373
Query: 826 XP 831
P
Sbjct: 374 PP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Frame = +2
Query: 740 PXXXGPAPRXTXPXXXXXFXPPGXPA---PPXXHNSXXPPXPXVXXXGRXPXXAPXGXPX 910
P P R P PP P+ PP PP P + G P P P
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 367
Query: 911 AG 916
AG
Sbjct: 368 AG 369
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = +1
Query: 649 PXSXPPXGXXRXSPXXXGKXPXXXXXXPQXAXXXGPXPPXHXALXXXXLXPPGXP-RPPX 825
P PP R P G P + P PP + PP P RPP
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 383
Query: 826 XP 831
P
Sbjct: 384 PP 385
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Frame = +2
Query: 731 PXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXP--XVXXXGRXPXXAPXGX 904
P P GP P P PPG PP PP G+ P G
Sbjct: 182 PGPPAPPGPDPHSLFPPQCPCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGP 241
Query: 905 P 907
P
Sbjct: 242 P 242
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +2
Query: 731 PXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXPXVXXXGRXPXXAPXGXP 907
P P GP P PPG P PP + PP P R P P G P
Sbjct: 223 PSEPPSPGPVDPSDEPSPSDPPGPPGPPGPP----TRRPPGPPGPPTRRPP--GPPGPP 275
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/91 (26%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP-XXH 832
P G PG P P + P P P P PPG P PP
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPPG 163
Query: 833 NSXXPPXPXVXXXGRXP----XXAPXGXPXA 913
+S P P + P P G P A
Sbjct: 164 DSGEPGSPGLPGQDAAPGEPGPKGPKGPPGA 194
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Frame = +2
Query: 731 PXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPPXP--XVXXXGRXPXXAPXGX 904
P P GP P P PPG PP PP G+ P G
Sbjct: 163 PGPPAPPGPDPHSLFPPQCPCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGP 222
Query: 905 P 907
P
Sbjct: 223 P 223
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/60 (26%), Positives = 17/60 (28%)
Frame = +2
Query: 671 GXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPP 850
G PG P P + P P P P PPG P P PP
Sbjct: 99 GTPGKPGKPGKPGAPGQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNGPP 158
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP 823
P G PG P P P P P P PPG P PP
Sbjct: 106 PPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP 161
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/70 (27%), Positives = 20/70 (28%)
Frame = +2
Query: 641 TPXRXPXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAP 820
TP P G PG P P + P P GP P P G P
Sbjct: 142 TPPPCPACPPGPPGAPGAPG---KPGSEGPPGPPGHDGPNGGPGQPGQPGPHGPNGHPGK 198
Query: 821 PXXHNSXXPP 850
P PP
Sbjct: 199 PGSQGPPGPP 208
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/62 (27%), Positives = 17/62 (27%)
Frame = +2
Query: 671 GXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXXPP 850
G G P P P P P P PPG P P S PP
Sbjct: 110 GAAGRPGTPGRPGAPGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGPP 169
Query: 851 XP 856
P
Sbjct: 170 GP 171
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP 823
P G PG P P P P P P PPG P PP
Sbjct: 101 PPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP 156
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = +2
Query: 671 GXPGFPQXPXEXXRXXXXXX--PXXPXXXGPAPRXTXPXXXXXFXPPGXPAPPXXHNSXX 844
G PG P P E R P P GP P PG P P S
Sbjct: 195 GPPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQGPPGPPGQAGPDGQPGAPGGPGTPGSKG 254
Query: 845 PP 850
PP
Sbjct: 255 PP 256
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP 823
P G PG P P P P P P PPG P PP
Sbjct: 108 PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP 823
P G PG P P P P P P PPG P PP
Sbjct: 101 PPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP 156
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXXPXXXGPAPRXTXPXXXXXFXPPGXPAPP 823
P G PG P P P P P P PPG P PP
Sbjct: 108 PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXX-PXXXGPAPRXTXPXXXXXFX--PPGXPAPPX 826
P + GG P P P P P G P P PP P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 827 XHNSXXPPXPXVXXXGRXPXXAPXG 901
PP P G P P G
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXX-PXXXGPAPRXTXPXXXXXFX--PPGXPAPPX 826
P + GG P P P P P G P P PP P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 827 XHNSXXPPXPXVXXXGRXPXXAPXG 901
PP P G P P G
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Frame = +2
Query: 656 PXLXGGXPGFPQXPXEXXRXXXXXXPXX-PXXXGPAPRXTXPXXXXXFX--PPGXPAPPX 826
P + GG P P P P P G P P PP P PP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 827 XHNSXXPPXPXVXXXGRXPXXAPXG 901
PP P G P P G
Sbjct: 350 GCPPPPPPPPPGGFKGGPPPPPPPG 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,931,834
Number of Sequences: 27780
Number of extensions: 161584
Number of successful extensions: 898
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -