Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N01
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    77   3e-15
SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|c...    27   4.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   6.3  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 38/102 (37%), Positives = 58/102 (56%)
 Frame = +3

Query: 147 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRV 326
           MG+ +  H+  +R + CA C  +L  +  L+S  + G  G A LF +V N+I  E +   
Sbjct: 1   MGRYYPVHLK-SRCYVCAKCKTHLAFKGHLLSHDYRGKNGPACLFKRVENVIEMEPKTEQ 59

Query: 327 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILE 452
           M TGR +VR + C  C T +GW Y  + E +Q++K+G  ILE
Sbjct: 60  MSTGRFIVRHIHCCRCHTYIGWKYVSSYEPSQKFKDGHYILE 101


>SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 138

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +3

Query: 186 LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSC 365
           +F CA+C   L   S    T+F    G    F  +   +   ++D     G H V  V C
Sbjct: 46  VFVCAACKELLYKAS----TKFESHCGWPAFFDNLPGKV-KRIEDNSY--GMHRVEAV-C 97

Query: 366 KNCGTKLGWVYE 401
            NCG  LG +++
Sbjct: 98  ANCGGHLGHIFK 109


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 363  KKHHAPCDVLLASHDPELPNRLDSQP 286
            K H   C V +A+ DPEL  + + QP
Sbjct: 1197 KCHLNTCPVGIATQDPELRKKFEGQP 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,151
Number of Sequences: 5004
Number of extensions: 42040
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)