Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N01
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635     99   4e-21
12_02_0358 - 17948460-17948687,17949442-17949534                       95   5e-20
10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031     87   1e-17
11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153     78   8e-15
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991...    44   2e-04
11_01_0316 + 2361904-2362237,2362454-2363178                           30   2.9  

>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
          Length = 110

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 43/106 (40%), Positives = 66/106 (62%)
 Frame = +3

Query: 147 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRV 326
           MG +F++ + G ++F C  C V+  +   ++S  F G  GRA+LF  VVN+     +DR+
Sbjct: 1   MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60

Query: 327 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 464
           ++TG H V D+ C  C   LGW YE A  E+Q+YKEG+ ILE+ ++
Sbjct: 61  LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106


>12_02_0358 - 17948460-17948687,17949442-17949534
          Length = 106

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 40/100 (40%), Positives = 62/100 (62%)
 Frame = +3

Query: 177 GTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRD 356
           G R++SC +C  ++    ++IS  F G  GRAFLF   +N++    +DR ++TG H V D
Sbjct: 6   GPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLHTVAD 65

Query: 357 VSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 476
           + C +C   LGW YE A EE Q+YKEG+ I E++ + + +
Sbjct: 66  IYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 105


>10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031
          Length = 119

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 39/91 (42%), Positives = 56/91 (61%)
 Frame = +3

Query: 186 LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSC 365
           +  C  C V+  +   ++S  F G  GRA+LF  VVN+     +DR ++TG H V+D+ C
Sbjct: 22  VLKCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYC 81

Query: 366 KNCGTKLGWVYEFATEENQRYKEGRVILERA 458
             C   LGW YE A EE+++YKEG+ ILE+A
Sbjct: 82  SCCQQILGWRYEKAYEESEKYKEGKFILEKA 112


>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
          Length = 123

 Score = 78.2 bits (184), Expect = 8e-15
 Identities = 33/74 (44%), Positives = 48/74 (64%)
 Frame = +3

Query: 255 GATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKE 434
           G  GRAFLF   +N+     +DR ++TG H V D+ C++C   LGW YE A EE+Q+YKE
Sbjct: 49  GRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKE 108

Query: 435 GRVILERALVTESD 476
           G+ I E+A + + +
Sbjct: 109 GKFIFEKAKIVKEN 122


>03_05_0798 +
           27798095-27798190,27798325-27798366,27799152-27799190,
           27799238-27799420
          Length = 119

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = +3

Query: 147 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEV 314
           MG++F+ H+ G +++SC  C  +L   S++IS  F    G+A+LF+K+  L Y+ V
Sbjct: 1   MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKLKLLAYNTV 55


>11_01_0316 + 2361904-2362237,2362454-2363178
          Length = 352

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/87 (21%), Positives = 30/87 (34%)
 Frame = +3

Query: 246 RFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQR 425
           RF G  G AF FH   +  +  V DR +    H +             W+   A   +  
Sbjct: 123 RFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDG 182

Query: 426 YKEGRVILERALVTESDGIEEIQVNVD 506
                 +  R      D ++ ++V VD
Sbjct: 183 GAHRLYVGARKTAAWDDDVDRLEVIVD 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,588
Number of Sequences: 37544
Number of extensions: 247084
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)