Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M24
         (1054 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   162   4e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   162   4e-42
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (394), Expect = 4e-42
 Identities = 74/89 (83%), Positives = 83/89 (93%)
 Frame = +1

Query: 274 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 453
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 454 VRIPKEQGLLSFWRGNFANVIRYFPTQAL 540
           VRIPKEQG LS+WRGN ANVIRYFPTQAL
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQAL 89



 Score = 27.5 bits (58), Expect = 0.21
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 361 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 519
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (394), Expect = 4e-42
 Identities = 74/89 (83%), Positives = 83/89 (93%)
 Frame = +1

Query: 274 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 453
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 454 VRIPKEQGLLSFWRGNFANVIRYFPTQAL 540
           VRIPKEQG LS+WRGN ANVIRYFPTQAL
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQAL 89



 Score = 27.5 bits (58), Expect = 0.21
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 361 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 519
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 620  HEXIX-RISRLLSVNAREHCLYYPEGEVSAWVGKYLMTLAKLPRQNERR 477
            HE +  R ++L+ V A      YPE E+   +  YL T A +   NE+R
Sbjct: 1150 HEALRGRTAQLIIVQAENA---YPEVELDRELRPYLRTAAAILTWNEKR 1195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,010
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35065791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)