Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M23
         (913 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VE87 Cluster: Putative uncharacterized protein; n=1; ...    38   0.47 
UniRef50_A1Z398 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    36   1.4  

>UniRef50_A4VE87 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 177

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -1

Query: 328 FLSTXFNHIYSNYKFVANNVYVXSLFFSLWLDPETTFYTLLPLL----KYVSLKFLHFFL 161
           F    F H+Y N+K    N +   LF  L       +Y LL  L    KY++ KF+ +FL
Sbjct: 41  FCQAFFIHLYPNHKLFNLNFHFYDLFSQLL--HRFNYYQLLESLILITKYLNFKFIKYFL 98

Query: 160 HISSIPLSPINK-STKSFKLL 101
            IS I L   N+   K+F  L
Sbjct: 99  LISQIILIESNQYQVKNFSQL 119


>UniRef50_A1Z398 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=3; Romanomermis|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Romanomermis nielseni
          Length = 493

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = -1

Query: 388 LXXF*HLFXTKNFVRREHFXFLSTXFNHIYSNYKFVANNVY-------VXSLFFSLWLDP 230
           L  F  L  T  +++R +F FL   F   +S +KF +N  Y       + ++F  LW+  
Sbjct: 346 LIYFFILIFTLLYMKRLYFIFLLKKFYFSFS-FKFTSNFTYMNFKYFFIFNMFSLLWMSN 404

Query: 229 ETTFYTLLPLLKYVSLKFLHFFL 161
             T+Y     L  V L FL F L
Sbjct: 405 ILTYYCYFNYLNLVMLLFLFFIL 427


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,541,071
Number of Sequences: 1657284
Number of extensions: 12862842
Number of successful extensions: 33024
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32191
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)