Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M23
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    28   1.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    28   1.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    28   1.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    28   1.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.9  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   4.9  

>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -1

Query: 289 KFVANNVYVXSLFFSLWLDPETTFYTLLPLLKYVSLKFLHFFL---HISSIPLSPINKST 119
           +F +N V V SL  SL+L     F+T   +   ++  F H F       + PL  ++ S 
Sbjct: 265 EFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISN 324

Query: 118 KSFKLLQTYKYVRPVGA 68
                +    + R +GA
Sbjct: 325 TQLSKVTNIIFFRVIGA 341


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -1

Query: 289 KFVANNVYVXSLFFSLWLDPETTFYTLLPLLKYVSLKFLHFFL---HISSIPLSPINKST 119
           +F +N V V SL  SL+L     F+T   +   ++  F H F       + PL  ++ S 
Sbjct: 265 EFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISN 324

Query: 118 KSFKLLQTYKYVRPVGA 68
                +    + R +GA
Sbjct: 325 TQLSKVTNIIFFRVIGA 341


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -1

Query: 289 KFVANNVYVXSLFFSLWLDPETTFYTLLPLLKYVSLKFLHFFL---HISSIPLSPINKST 119
           +F +N V V SL  SL+L     F+T   +   ++  F H F       + PL  ++ S 
Sbjct: 265 EFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISN 324

Query: 118 KSFKLLQTYKYVRPVGA 68
                +    + R +GA
Sbjct: 325 TQLSKVTNIIFFRVIGA 341


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -1

Query: 289 KFVANNVYVXSLFFSLWLDPETTFYTLLPLLKYVSLKFLHFFL---HISSIPLSPINKST 119
           +F +N V V SL  SL+L     F+T   +   ++  F H F       + PL  ++ S 
Sbjct: 265 EFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISN 324

Query: 118 KSFKLLQTYKYVRPVGA 68
                +    + R +GA
Sbjct: 325 TQLSKVTNIIFFRVIGA 341


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -1

Query: 307 HIYSNYKFVANNVYVXSLFFSLWLDPETTFYTLLPLLKYVSLKFLHFFLHISS 149
           H ++   ++  + +     F+ W   +  F+  + LLK +S+     FLH+ S
Sbjct: 228 HFFAQCSYLKKSNFPSPPLFTAWTWIKPCFFNFVILLKRISIGDSQLFLHLHS 280


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 250 FSLWLDPETTFYTLLPLLKYVSLKFLHFFLHISSIPLSPINKSTKSFKLL 101
           F  W DP +   T L  L   ++         S +P+SP   STKS K L
Sbjct: 192 FFTWKDPNSLSPTKLSFLSTSNIDPEDLTEDNSILPVSPTRDSTKSHKTL 241


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 169  FFLHISSIPLSPINKSTKSFKLLQTY 92
            F++ ISS+PL+P NK  K  K+++ +
Sbjct: 3206 FYVFISSVPLTPTNKFDKK-KVIEEF 3230


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 238 LDPETTFYTLLPLLKYVSLKFLHFFLHISSIPLSPINKSTKSFKLLQTYKYVRP 77
           + P++ FY LLPL+  +   FL      S+   S        +   Q YKY  P
Sbjct: 259 MPPKSIFYQLLPLIVVILFAFL------SNFSWSDSTSVNTRYSFQQNYKYTVP 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,706
Number of Sequences: 5004
Number of extensions: 48563
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)