Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M23
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 256 LFFSLWLDPETTFYTLLPLLKYVSLKFL 173
           +FF++ L  +T FYT+  ++  VS+ +L
Sbjct: 225 IFFNITLRRKTLFYTVNLIVPCVSISYL 252


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 16/82 (19%), Positives = 37/82 (45%)
 Frame = -1

Query: 373 HLFXTKNFVRREHFXFLSTXFNHIYSNYKFVANNVYVXSLFFSLWLDPETTFYTLLPLLK 194
           H      ++  + F F+    N +  +Y F   +    +L   +   P  T+ + + ++ 
Sbjct: 2   HFNNVIKYINFDRFFFIEGMTNVLDFDYYFYDYSNRTQALESIIANIP--TWLSFIRIVL 59

Query: 193 YVSLKFLHFFLHISSIPLSPIN 128
            + L+  +  +HI S+P++ IN
Sbjct: 60  VILLRAGYVLIHIGSVPVNNIN 81


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 720 NLGKIIILR-NPARTGESPQLPTD 788
           NLG    +  +PA T   PQLPT+
Sbjct: 437 NLGSACRIHGSPATTAAPPQLPTE 460


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 177 FCIFFCTSAQFHYLP*INPQNRLNYYKLTN 88
           F +FF     F++   ++   R+NYY + +
Sbjct: 431 FPLFFLAINVFYWFAYLSRSERINYYNVNS 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,701
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)