Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M22
(931 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0400 - 22608519-22608844,22609044-22609122 31 0.99
03_01_0023 + 198414-198968 31 1.7
06_03_1326 - 29355467-29355817 30 3.0
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 30 3.0
06_03_0790 - 24636805-24637770 29 4.0
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 29 7.0
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 29 7.0
02_05_0686 - 30900748-30902167,30903442-30904742 29 7.0
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732... 28 9.2
06_03_1370 + 29645598-29646288,29646364-29646752 28 9.2
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747 28 9.2
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 31.5 bits (68), Expect = 0.99
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = -1
Query: 574 GXXGXXPPXGGGPXPXXXXXXXXXXPXXGGGKXXGXXXGGXGXXXGXKXGGGGXXXFFSP 395
G G GGG GGG G GG G G GGGG ++ P
Sbjct: 37 GGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPP 96
>03_01_0023 + 198414-198968
Length = 184
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -1
Query: 583 PXXGXXGXXPPXGGGPXPXXXXXXXXXXPXXGGGKXXGXXXGGXGXXXGXKXGGGG 416
P G G GGG GGG G GG G G GGGG
Sbjct: 33 PSPGGGGGGGGGGGGGGGGRGGGGGSGGGSGGGGGSGGGGSGGGGSGGGGSGGGGG 88
>06_03_1326 - 29355467-29355817
Length = 116
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGG 416
GGGK G GG G G GGGG
Sbjct: 20 GGGKGGGGGSGGGGRSGGGGGGGGG 44
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGG 416
GGG G GG G G + GGGG
Sbjct: 15 GGGGGGGGKGGGGGSGGGGRSGGGG 39
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -1
Query: 574 GXXGXXPPXGGGPXPXXXXXXXXXXPXXGGGKXXGXXXGGXGXXXGXKXGGG 419
G G PP GGG GGG G GG G G + GGG
Sbjct: 42 GRGGRGPPGGGG---GRGYEPGGGRGYGGGGGGGGRGYGGGGGGGGYESGGG 90
>06_03_0790 - 24636805-24637770
Length = 321
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -1
Query: 574 GXXGXXPPXGGGPXPXXXXXXXXXXPXXGGGKXXGXXXGGXGXXXGXKXGGGG 416
G G GGG GGG+ G GG G G GGGG
Sbjct: 90 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGG 142
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 499 PXXGGGKXXGXXXGGXGXXXGXKXGGGG 416
P GGGK GG G G GGGG
Sbjct: 101 PKDGGGKGQPKDAGGKGQKGGGGGGGGG 128
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGG 416
GGG+ G GG G G GGGG
Sbjct: 574 GGGRGGGYSRGGRGGYSGGGGGGGG 598
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +3
Query: 450 PXPPXXXPXXXPPPXXGXXXXXXXXXXGXGPPPXGGXXPXXPXXG 584
P PP PPP G PPP G P P G
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPG 371
>12_02_0450 +
19172812-19172920,19173020-19173088,19173168-19173274,
19173874-19174365
Length = 258
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGG 416
GGG G GG G G + GGGG
Sbjct: 141 GGGYGGGGYSGGGGGGGGYQGGGGG 165
>06_03_1370 + 29645598-29646288,29646364-29646752
Length = 359
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGG 416
GGG G GG G G + GGGG
Sbjct: 11 GGGGGGGGVGGGGGGGRGGERGGGG 35
>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
Length = 368
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGG 416
G G G GG G G K GGGG
Sbjct: 205 GNGNGGGGGGGGGGKKKGKKGGGGG 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,873,542
Number of Sequences: 37544
Number of extensions: 266199
Number of successful extensions: 1645
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -