Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M22
(931 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 30 2.7
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 6.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.3
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.3
U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-li... 28 8.3
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = -1
Query: 583 PXXGXXGXXPPXGGGPXPXXXXXXXXXXPXXGGGKXXGXXXGGXGXXXGXKXGGGG 416
P G G P GGP P G G G GG G GGG
Sbjct: 22 PGFGGPGFGGPGSGGPGPRGPGEWNNGGGRGGFGGNNGWNNGGGGFNGNGGFNGGG 77
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGG 416
GGG G GG G G + GGGG
Sbjct: 85 GGGGNGGGGRGGGGGGGGGRGGGGG 109
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +3
Query: 456 PPXXXPXXXPPPXXGXXXXXXXXXXGXGPPPXGGXXPXXPXXGXXXXXXXXGXXXXXGXX 635
PP P PP G G PPP G P P G G
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 636 XXPPP 650
PPP
Sbjct: 296 SPPPP 300
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +3
Query: 456 PPXXXPXXXPPPXXGXXXXXXXXXXGXGPPPXGGXXPXXPXXGXXXXXXXXGXXXXXGXX 635
PP P PP G G PPP G P P G G
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 636 XXPPP 650
PPP
Sbjct: 317 SPPPP 321
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +3
Query: 456 PPXXXPXXXPPPXXGXXXXXXXXXXGXGPPPXGGXXPXXPXXGXXXXXXXXGXXXXXGXX 635
PP P PP G G PPP G P P G G
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 636 XXPPP 650
PPP
Sbjct: 302 SPPPP 306
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/78 (26%), Positives = 21/78 (26%)
Frame = -1
Query: 649 GGGXXXXPXXXXXPXXXXNXXXPXXGXXGXXPPXGGGPXPXXXXXXXXXXPXXGGGKXXG 470
G G P P N P P GGP GGG
Sbjct: 267 GSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGPGTDAAYCPCPPRTPAGGGGGGD 326
Query: 469 XXXGGXGXXXGXKXGGGG 416
GG G G GGGG
Sbjct: 327 FPAGGGG--GGYSTGGGG 342
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -1
Query: 574 GXXGXXPPXGGGPXPXXXXXXXXXXPXXGGGKXXGXXXGGXGXXXGXKXGGG 419
G G GGG P GGG G GG G G GGG
Sbjct: 97 GGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGG 148
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/80 (27%), Positives = 22/80 (27%), Gaps = 2/80 (2%)
Frame = -1
Query: 649 GGGXXXXPXXXXXPXXXXNXXXPXXGXXGXXPPXG--GGPXPXXXXXXXXXXPXXGGGKX 476
GGG P G G PP GG GGG
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
Query: 475 XGXXXGGXGXXXGXKXGGGG 416
G GG G G GGGG
Sbjct: 103 CGGGGGGCGGGGGGCGGGGG 122
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/80 (27%), Positives = 22/80 (27%), Gaps = 2/80 (2%)
Frame = -1
Query: 649 GGGXXXXPXXXXXPXXXXNXXXPXXGXXGXXPPXG--GGPXPXXXXXXXXXXPXXGGGKX 476
GGG P G G PP GG GGG
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
Query: 475 XGXXXGGXGXXXGXKXGGGG 416
G GG G G GGGG
Sbjct: 103 CGGGGGGCGGGGGGCGGGGG 122
>U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-like
protein protein32 protein.
Length = 105
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 490 GGGKXXGXXXGGXGXXXGXKXGGGGXXXFFSPXFLKXWG 374
GGG+ G GG G G GGG F+ + WG
Sbjct: 67 GGGRGYGGRGGGWGGRGGGWGRGGGGRGFYGGG-RRGWG 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,280,551
Number of Sequences: 27780
Number of extensions: 154053
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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