Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M21
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32...    31   0.88 
01_05_0148 + 18609853-18610058,18610347-18612669                       31   1.5  
11_05_0071 - 18821475-18821609,18821691-18822065,18822142-188226...    29   4.7  
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    29   4.7  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    29   6.2  
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657...    28   8.2  

>01_01_0042 +
           317586-317640,318128-318185,318799-319236,320426-320467,
           320468-320648,320838-320867
          Length = 267

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -2

Query: 305 AAAAVAWRCESRR------DAVMPVKTSAW--QYFYAESYRLRQICYAVSGFVVLTKTLF 150
           AAAA  WR ++ R      D   P  T  W      A  Y LR   Y V GF ++T  L 
Sbjct: 76  AAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALR--VYLVQGFYIVTYGLG 133

Query: 149 *YTLNLFILYKNLML 105
            Y LNL I + + M+
Sbjct: 134 IYLLNLLIGFLSPMV 148


>01_05_0148 + 18609853-18610058,18610347-18612669
          Length = 842

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 457 DDDRRWERKLFDGKTIYVHLLSNEAISQRPNMDFSKRTVVYVGGYMDSPS 606
           +D+RRWE +  D + + VH L N+ I Q  +   S R+V+ +   M S S
Sbjct: 436 EDNRRWEHEDRDERRLVVHKL-NKDIDQEISCAHSLRSVITLDNSMISSS 484


>11_05_0071 -
           18821475-18821609,18821691-18822065,18822142-18822674,
           18822776-18823331,18824593-18824621,18824970-18825018
          Length = 558

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 346 NNFAEQTRAHTLN-LILVVLWSWRRQGSSDHEEQPQIPDDDRRWERKLFDGKTIY 507
           NN AE+ R+     L+L+ LWSW R      +   Q  D+    E +  DG  I+
Sbjct: 141 NNGAEKARSKIFGPLVLLQLWSWSRLPLGRPKNIIQKTDEVEEQEEEESDGYPIF 195


>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 457 QVFEAVLRDHCFPVASRTTVQLKLDSACGLSSVRRSYF 344
           QVFE + + HC P A   T+ +++    G +S   S+F
Sbjct: 258 QVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFF 295


>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
            24665465-24665887,24665960-24666252,24666332-24666605,
            24666856-24667358,24667464-24667785,24667875-24668220,
            24668339-24668997,24669524-24669625,24669656-24670052,
            24670155-24670270,24670360-24670386
          Length = 1704

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 352  FAEQTRAHTLNLILVVLWSWRRQGSSDHEEQPQIPDDD 465
            F+E    + L  ++  L+S  R  S+D    P IP+DD
Sbjct: 1303 FSESFWTNILESVIYPLFSSERSSSNDPTSTPSIPEDD 1340


>03_02_0226 -
           6569657-6570388,6570461-6570748,6570846-6571303,
           6571694-6571828,6571829-6572084,6572229-6572451,
           6572533-6572661,6573570-6573775
          Length = 808

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/64 (20%), Positives = 29/64 (45%)
 Frame = +2

Query: 542 DRTWISVSEQLYTSEGIWTVRVIQLQVYWPPQYRRXGYNVLLLDTNKFTGMEYPLAVRYI 721
           D+ W  + EQ      ++  R+  ++  W P Y R  +   +  T +   M + L  +Y+
Sbjct: 378 DKAWSDLMEQYNLESSVYLRRMWDMKKKWAPAYFREFFFARMSTTQRSESMNHVLK-KYV 436

Query: 722 RTAA 733
           + ++
Sbjct: 437 KPSS 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,577,573
Number of Sequences: 37544
Number of extensions: 435463
Number of successful extensions: 1148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)