Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M20
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    79   1e-15
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    29   1.1  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   6.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   8.1  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 5/160 (3%)
 Frame = +2

Query: 272 KDCDRLTPLVYPTNYDLVLKPDLKTGVFEGTVKINITVKADQKKIALHSKFLKIKGLSLN 451
           K+ + L   V P +YDL L PDL+T  + G V + + V  D   I LH   L+I   +L 
Sbjct: 15  KNRNLLPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALE 74

Query: 452 RGDEAISILKYSREKQSQQLVVHFENVLNSGNYQ-MNIEFSGDLTRKIVGFYLSHLKDN- 625
            G + +   + S     +++V+ F + + + +   + + F+  ++  + GFY S   D+ 
Sbjct: 75  WGSQTVWASEVS--YGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSYVDSD 132

Query: 626 ---RTMVASKFQPTYARQAFPCFDEPDFKATYDIALVKPE 736
              + +  ++ +PT AR+AFPC+DEP  KAT+ I +   E
Sbjct: 133 GNTKYLATTQMEPTSARRAFPCWDEPALKATFTIDITAKE 172



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 741 YVALSNMNEISVTXDPSSDLETVKFATXVPMSTYL 845
           Y  LSNMN +  T      L+T +FA    MSTYL
Sbjct: 174 YTILSNMNAVEETV--KDGLKTARFAETCRMSTYL 206


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +2

Query: 482 YSREKQSQQLVVHFENVLNSGNYQMNIEFSGDLTRKIVGFYLSHLKDNRTMVASKFQPTY 661
           YS+ +  Q L   F  VL       ++E    L +K+V  +L   KD   ++    +  Y
Sbjct: 351 YSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLY 410

Query: 662 ARQAFP-CFDEPDFKATYDIAL 724
           A  A   C D PD     +I L
Sbjct: 411 ALVAGECCADNPDSPQHQEILL 432


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +2

Query: 611 HLKDNRTMVASKFQPTYARQAFPCFDEPDFKATYDIALVKPEXVCG 748
           HL +   ++    Q  Y  +   CF+  D +   D+ L   +  CG
Sbjct: 5   HLTETNVVIPDNSQVIYREECVRCFNSQDEEGGIDLCLTCFQSGCG 50


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 787 GSXVTDISFMFDNATYPFGFNKCNIICGF 701
           G   T ++ M  N  YPFGF K   + GF
Sbjct: 393 GLVATTLAKMPLNYAYPFGFAKIEALSGF 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,433
Number of Sequences: 5004
Number of extensions: 68139
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)