Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M20
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 85 9e-17
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 78 1e-14
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 78 1e-14
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 78 1e-14
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 33 0.40
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 30 2.8
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 6.5
10_08_0515 - 18473545-18473791,18473921-18474156,18474299-184744... 28 8.5
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 84.6 bits (200), Expect = 9e-17
Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
Frame = +2
Query: 251 EYSETKMKDCDRLTPLVYPTNYDLVLKPDLKTGVFEGTVKINITVKADQKKIALHSKFLK 430
E S + + RL P YDL L PDL F G+V +++ V A + + L++ L+
Sbjct: 5 EQSAEQFRGQARLPGFAAPRRYDLRLVPDLDGCAFTGSVDVSVDVTAPTRFLVLNAAELE 64
Query: 431 IK--GLSL--NRGDEAISILKYSREKQSQQLVVHFENVLNSGNYQMNIEFSGDLTRKIVG 598
+ G+ + ++ + + + + + L++ F VL G + I F G L K+ G
Sbjct: 65 VSPGGVQFKPHGAEQELHPAEVTNVPEDEILIIRFNEVLPVGEGTLVIAFKGTLNDKMHG 124
Query: 599 FYLSHLKDN---RTMVASKFQPTYARQAFPCFDEPDFKATYDIALVKP 733
FY S + N + M ++F+P AR+ FPC+DEP FKA + I L P
Sbjct: 125 FYRSVYELNGEKKNMAVTQFEPADARRCFPCWDEPSFKAIFKITLEVP 172
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 77.8 bits (183), Expect = 1e-14
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Frame = +2
Query: 284 RLTPLVYPTNYDLVLKPDLKTGVFEGTVKINITVKADQKKIALHSKFLKIKGLSLNRGDE 463
RL P Y+L L+PDL VF G + + V A + + L++ L + S+ +
Sbjct: 13 RLPRFAAPRRYELRLRPDLAACVFSGEASVAVDVSAPTRFLVLNAADLAVDRASIRF--Q 70
Query: 464 AISILKYSREKQSQQLVVHFENVLNSGNYQMNIEFSGDLTRKIVGFYLSHLK---DNRTM 634
++ + S ++ + LV+ F L G + + F+G L ++ GFY S + + + M
Sbjct: 71 GLAPAEVSVFEEDEILVLEFAGELPLGEGVLAMRFNGTLNDQMRGFYRSKYEYKGETKNM 130
Query: 635 VASKFQPTYARQAFPCFDEPDFKATYDIALVKPEXVCGI 751
++F+ AR+ FPC+DEP FKA + + L P + +
Sbjct: 131 AVTQFESVDARRCFPCWDEPSFKAKFKLTLEVPSELVAL 169
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 77.8 bits (183), Expect = 1e-14
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Frame = +2
Query: 284 RLTPLVYPTNYDLVLKPDLKTGVFEGTVKINITVKADQKKIALHSKFLKIKGLSLNRGDE 463
RL P Y+L L+PDL VF G + + V A + + L++ L + S+ +
Sbjct: 19 RLPRFAAPRRYELRLRPDLDACVFTGDASVVVDVSAPTRFLVLNAADLAVDRASIRF--Q 76
Query: 464 AISILKYSREKQSQQLVVHFENVLNSGNYQMNIEFSGDLTRKIVGFYLSHLK---DNRTM 634
++ + S + + LV+ F+ L G + ++F+G L ++ GFY S + + + M
Sbjct: 77 GLAPTEVSLFEDDEILVLEFDGELPLGEGVLAMDFNGTLNDQMRGFYRSKYEYKGETKNM 136
Query: 635 VASKFQPTYARQAFPCFDEPDFKATYDIALVKPEXVCGI 751
++F+ AR+ FPC+DEP FKA + + L P + +
Sbjct: 137 AVTQFEAVDARRCFPCWDEPAFKAKFKLTLEVPSELVAL 175
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 77.8 bits (183), Expect = 1e-14
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Frame = +2
Query: 284 RLTPLVYPTNYDLVLKPDLKTGVFEGTVKINITVKADQKKIALHSKFLKIKGLSLNRGDE 463
RL P +YDL L+PDL F G+ + + V A + + L++ L + G S E
Sbjct: 13 RLPRCASPLSYDLRLRPDLAACAFSGSAAVAVAVSAPTRFLVLNAAELAVDGSSDLVPSE 72
Query: 464 AISILKYSREKQSQQLVVHFENVLNSGNYQMNIEFSGDLTRKIVGFYLSHLK---DNRTM 634
+ ++ + +V+ F L G + ++F+G L ++ GFY S + ++R M
Sbjct: 73 VVQF------EEDEIVVIGFGQDLPIGEGVLKMDFTGTLNDQMRGFYRSKYEYKGESRNM 126
Query: 635 VASKFQPTYARQAFPCFDEPDFKATYDIALVKPEXVCGI 751
++F+ AR+ FPC+DEP FKA + + L P + +
Sbjct: 127 AVTQFEAADARRCFPCWDEPAFKAKFKLTLEVPSELVAL 165
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 635 VASKFQPTYARQAFPCFDEPDFKATYDIALVKPEXVCGI 751
V S+ Q +AR FPC D P + T+D+ L P + +
Sbjct: 126 VFSQCQSIHARSVFPCHDTPAARITFDLLLNVPTQLSAV 164
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/94 (28%), Positives = 44/94 (46%)
Frame = +2
Query: 365 VKINITVKADQKKIALHSKFLKIKGLSLNRGDEAISILKYSREKQSQQLVVHFENVLNSG 544
V++N +A +K++ L SK + +GL RG++ S L+ QS V E + +
Sbjct: 71 VEVNEMWRAREKELELESKMKRSRGLGDARGEKRKSDLR----NQSSSPRVEEEGIAYNS 126
Query: 545 NYQMNIEFSGDLTRKIVGFYLSHLKDNRTMVASK 646
+Y + GD I F S +K R V S+
Sbjct: 127 SYSDQEDGLGD--DDIEKFLHSRVKRGRGAVGSR 158
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 762 SCLTMPHTXSGLTSAISYVALKSGSSKQGN 673
SC T PH+ S +S+ S A SGSS N
Sbjct: 195 SCRTQPHSSSSSSSSSSSSASSSGSSSSHN 224
>10_08_0515 -
18473545-18473791,18473921-18474156,18474299-18474460,
18474731-18474948,18475048-18475120
Length = 311
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 701 KATYDIALVKPEXVCGIV 754
K YD+AL P+ VCGIV
Sbjct: 108 KPAYDLALCHPDRVCGIV 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,241,032
Number of Sequences: 37544
Number of extensions: 353871
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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