Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M18
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 59 9e-10
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.66
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 29 0.88
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 29 1.2
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 28 2.0
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 27 2.7
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 4.7
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 6.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.2
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 26 6.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.2
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 8.2
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 58.8 bits (136), Expect = 9e-10
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 9/236 (3%)
Frame = +2
Query: 53 LVVGAGINGLTCALRIQEKYKKYRVVLLAKQFTPNTTGDGSAGLWYP--FETGNTSSELL 226
++VGAG+ GLT A + + R+ ++AK +TP W F + + + +
Sbjct: 11 VIVGAGVIGLTTAWILSDLGLAPRIKVIAK-YTPEDRSVEYTSPWAGANFCSISATDDNA 69
Query: 227 CKWGTATYE---FLHRLWLEGGLDVCAVPLSFVYRKPRNENKPDWGKHTFGYRQIGEKHL 397
+W TY +L + E G+ + + Y +P+++ W + ++ I EK L
Sbjct: 70 LRWDKITYHRFAYLAKTRPEAGIRFADLRELWEY-EPKHDKIRSWNTYVRDFKVIPEKDL 128
Query: 398 EYLSKRHSQKFVSGHTFTTLIVPPTKLMAHFHKLFEEAGGRTLQVEVSSLEDPI--LGEY 571
+ + GH TT ++ + + +KL EAG + E+S +++ + E
Sbjct: 129 P-------GECIYGHKATTFLINAPHYLNYMYKLLIEAGVEFEKKELSHIKETVEETPEA 181
Query: 572 DVVVNCTGIGARDL--VPDNSVFSVKGQVTXGIRPLGSTNASWTSTVEITSYLIPK 733
VV NCTG+ A L V D V+ +G V ++ T + +Y+IP+
Sbjct: 182 SVVFNCTGLWASKLGGVEDPDVYPTRGHVVL-VKAPHVTETRILNGKNSDTYIIPR 236
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 56 VVGAGINGLTCALRIQEKYKKYRVVLLAKQFTP 154
VVGAG+ GL CA ++ + +Y L+K P
Sbjct: 511 VVGAGLTGLICARQLTGLFSQYSSSFLSKNELP 543
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 29.1 bits (62), Expect = 0.88
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 708 STVDVHDAFVXPKGRIPLVTCPLTENTLLSGTRS--LAPIPVQFTTTSYS 565
ST + +A V R+P + C +++ + S L PIPVQ T SYS
Sbjct: 264 STCEAKNAKVVFLERVPKLDCSYSDHFAIETVLSIKLQPIPVQETRVSYS 313
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/59 (18%), Positives = 31/59 (52%)
Frame = +3
Query: 198 KRVTRPRNYYVNGVLRHTNSCTDCGWREAWMYVRCHCPSSIGSQETRISQTGVNILSDI 374
+++T + ++N L+ ++ W + ++ ++ +I Q TR+ T +N++ D+
Sbjct: 390 QKITSVVSTHINANLQQFSTNPSLEWNKKYVALQLFSAIAIKGQSTRLGVTSINLMVDV 448
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 290 VCAVPLSFVYRKPRNENKPDWGKHTFGYRQ-IGEKHLEYLSKRHSQKFVSGH-TFTTLI 460
+C VP V+ +N+N + F YR I E + + +SK + V+ TFT L+
Sbjct: 210 ICTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDENYCDRMSKFNQNDLVTTTITFTPLL 268
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 53 LVVGAGINGLTCALRIQEKYKKYR 124
LVVG G G++ A +I K+ KYR
Sbjct: 32 LVVGGGSAGISVAHQIYNKFSKYR 55
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 29 ESLRFDR*LVVGAGINGLTCALRIQEKYKKYRVVLLAKQFTP 154
ESL ++GAG+ G++CA ++ + +Y L++ P
Sbjct: 253 ESLSQKTVAIIGAGMAGISCARQLTNLFAQYEQDFLSRGEKP 294
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 478 NGTLSQAVRRGWRKDASSGSVLAG-GPDLGRI*RGRELYR 594
NGTLSQ RR ++ +S L G G G + + +++Y+
Sbjct: 312 NGTLSQRTRRITKQTSSKTPFLGGVGSAFGVVGKKKQIYK 351
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = -1
Query: 660 PLVTCPLTENTLLSGT-RSLAPIPVQFTT----TSYSPKIGSSSEDTST*SVLPPASSNS 496
P++T + + S T S +P+P T+ TS P GSSS T +PP S++S
Sbjct: 86 PIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSS 145
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 645 PLTENTLLSGTRSLAPIPVQFT--TTSYS-PKIGSSSEDTST*SVLPPASSNS 496
P+ + S + +P+P T TTS S P GSSS T +PP S++S
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSS 258
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 593 GIGARDLVPDNSVFSVKGQVTXGIRPLGSTNASWTSTVE----ITSYLIPKYV 739
GI RDL P+N + V+G + L N S +T T YL P+ +
Sbjct: 387 GIVYRDLKPENILLDVQGHIALCDFGLSKANLSVGTTTRTFCGTTDYLAPEVI 439
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -1
Query: 639 TENTLLSGTRSLAPIPVQFTTTSYSPKIGSSSEDTST*SVLPPASSNS 496
+ ++++S + S + P T+++ S SSS TST S + +SS+S
Sbjct: 268 SSSSIISSSSSSSSSPTS-TSSTISSSSSSSSSPTSTSSTISSSSSSS 314
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 108 FSWIRKAQVKPLIPAPTTSYLSNLK 34
F+W+++ VKPL+ + +L + K
Sbjct: 100 FAWVKRNSVKPLLDSEIAKFLGSSK 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,846,388
Number of Sequences: 5004
Number of extensions: 89244
Number of successful extensions: 302
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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