Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M18
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644... 32 0.70
10_08_0748 - 20277623-20277736,20277956-20279425 30 2.1
07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729... 29 4.9
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 29 4.9
03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737 29 4.9
01_05_0804 + 25378929-25379036,25379209-25379526,25379914-25380546 29 4.9
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865... 29 6.5
07_01_0758 - 5833016-5833234,5833324-5833839,5833940-5833960,583... 28 8.6
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420... 28 8.6
>04_01_0490 -
6440176-6440448,6440785-6441074,6441156-6441304,
6441432-6441890,6441973-6442269,6442604-6443502,
6443793-6443827,6443984-6444078,6444184-6444247,
6446099-6446175,6446330-6446514
Length = 940
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 143 QFTPNTTGDGSAGLWYPFETGNTSSELLCKWGT 241
Q TPNTTG G A W F G+T E+ C GT
Sbjct: 113 QITPNTTGCGGADTWADF--GST-EEMFCPAGT 142
>10_08_0748 - 20277623-20277736,20277956-20279425
Length = 527
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +3
Query: 141 NNSPRTR-PGTAPRVSGTHSKRVTRPRNYYVNGVLRHTNSCTDCGWR 278
N P R P PRV R+ R RN V RH DC WR
Sbjct: 420 NTRPVARQPCQKPRVYYMRDSRMDRRRNVTVTEYDRHRGKQPDCRWR 466
>07_03_1540 -
27570605-27571375,27571474-27572748,27572769-27572921,
27572923-27573159
Length = 811
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 515 GRTLQVEVSSLEDPILGEYDVVVNCTGIGARDL 613
GR +VE SLE+ DVVVNC+G+ RDL
Sbjct: 520 GRVNRVEPVSLEELGRPRIDVVVNCSGV-FRDL 551
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 194 FETGNTSSELLCKWGTATYEFL--HRLWLEGGLDVCAVP 304
FE +ELL + TYE HR L+G L++C VP
Sbjct: 581 FEVIKVLTELLDQLDIGTYEIKLNHRKLLDGMLEICGVP 619
>03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737
Length = 529
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 LHRLWLEGGLDVCAVPLSFVYRKPRNENK-PDWGKHTFGYRQIGEK-HLEYL 406
L LW+ +C VYR N K P+ F YR +GE+ HL L
Sbjct: 393 LATLWVNDEYMICTTKNDLVYRGSSNSEKDPNHTVVCFAYRFVGEELHLRVL 444
>01_05_0804 + 25378929-25379036,25379209-25379526,25379914-25380546
Length = 352
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 616 YQIPRANPGTVHDH---VIFSQDRVLQRGHFHLKRPSASLFEQLVKVC 482
Y +PR+ PG DH V FS ++L G F + +FE V+ C
Sbjct: 255 YDVPRSFPGIDADHLQPVHFSSWKLLAHG-FRFRYTLEDMFEAAVRTC 301
>03_02_0842 + 11682332-11683802,11683858-11683940,11684751-11686553,
11687783-11688633,11689230-11689299,11689597-11689641
Length = 1440
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 515 GRTLQVEVSSLEDPILGEYDVVVNCTGIGARDL 613
GR +VE SLE+ DVV+NC+G+ RDL
Sbjct: 1084 GRVNRVEPVSLEELGRPRIDVVINCSGV-FRDL 1115
>07_01_0758 -
5833016-5833234,5833324-5833839,5833940-5833960,
5834062-5834232,5834318-5834449,5834534-5834743
Length = 422
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 156 TRPGTAPRVSGTHSKRVTRPRNYYVNGVLRHTNSCTDC 269
T PGT+P G H +TR +N V G + T DC
Sbjct: 219 TAPGTSPNTDGIH---ITRSKNVQVTGCIIKTGD--DC 251
>04_04_1375 +
33040329-33040854,33041611-33041838,33041984-33042081,
33042406-33042450,33042678-33042846,33042917-33043026,
33043983-33044051,33044085-33044158,33044738-33044804,
33044876-33044988,33045148-33045237,33046030-33046144,
33046230-33046388
Length = 620
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -1
Query: 312 KDNGTAHTSKPPSNHSRCRNSYV--AVPHLHNN---SEDVLPVSNGYQRPAE 172
K+NGT ++PP +S C +S + A P ++N+ E+ LP+ ++ E
Sbjct: 249 KNNGTTSYNQPPRANSPCEDSTLKEADPFINNHCPQEENALPIEERKKKQQE 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,368,248
Number of Sequences: 37544
Number of extensions: 640958
Number of successful extensions: 1888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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