Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M17
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 260 2e-70
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 121 2e-28
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 81 2e-16
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 63 4e-11
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 56 9e-09
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 42 9e-05
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 39 0.001
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 34 0.031
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 33 0.054
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 33 0.071
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 2.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.7
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 27 3.5
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 260 bits (636), Expect = 2e-70
Identities = 120/202 (59%), Positives = 151/202 (74%)
Frame = +1
Query: 205 FENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHY 384
FE +QRN L +KGFP PKAT TGTTIVG+I D ++LGADTRAT +++DKNC+K+H
Sbjct: 12 FEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHL 71
Query: 385 LASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGA 564
++ N++C GAGTAADTE T ++S +EL L+T R V TA T+LK+ LFRYQGHIGA
Sbjct: 72 ISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGA 131
Query: 565 ALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVR 744
LVLGG D GPH++ I HGS DKLPY +GSGSLAA++V E ++ D+ E +LV+
Sbjct: 132 YLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVK 191
Query: 745 DAIAAGIFNDLGSGSNVDLCVI 810
+AI AGIFNDLGSGSN DL VI
Sbjct: 192 EAIEAGIFNDLGSGSNCDLVVI 213
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 121 bits (291), Expect = 2e-28
Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 1/186 (0%)
Frame = +1
Query: 268 KTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQ 447
+ GTTI + Y DGVIL AD+R T ++++ K+ L N++CC +G+AADT+
Sbjct: 22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVAD 81
Query: 448 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGPHIYCIYPH 624
+ L + R+ G V TAATL M ++ + + A L++ G D +TG +Y I
Sbjct: 82 LLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLG 141
Query: 625 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLC 804
GS+ K P A GSGS +A ++ +M +EE + +++A+A + D SG + +
Sbjct: 142 GSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMV 201
Query: 805 VIRNTG 822
++ G
Sbjct: 202 ILNKDG 207
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 81.4 bits (192), Expect = 2e-16
Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 3/186 (1%)
Frame = +1
Query: 274 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQ 447
GTT + Y G+++ D+RA+ +++ + +K+ + N Y G AG AAD +
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKV--IEINPYLLGTLAGGAADCQFWET 118
Query: 448 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPHIYCIYPH 624
+ + L +L + V A+ +L + + Y+G+ + +L G + G +Y I
Sbjct: 119 VLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD 178
Query: 625 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLC 804
G+ K ++GSGS A V ++G++ D++++E L + +I A D SG +V+L
Sbjct: 179 GTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLY 238
Query: 805 VIRNTG 822
I G
Sbjct: 239 HIDENG 244
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 63.3 bits (147), Expect = 4e-11
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 11/201 (5%)
Frame = +1
Query: 253 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 432
A +A K G+T +G+ D V+LG + R T + ++ + +K+ + S++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKDAVVLGVEKRLT-SPLMESHSVEKLFEIDSHIGCAISGLTADA 85
Query: 433 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH----------IGAALVLG 579
+ Q + R +E+ + + R+ +G G AL++
Sbjct: 86 RTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIA 145
Query: 580 GVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAA 759
G+D GP +Y P G+ + +GSGS A + + +DM EE + L+ +
Sbjct: 146 GIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQ 205
Query: 760 GIFNDLGSGSNVDLCVIRNTG 822
+ L S NV L + G
Sbjct: 206 VMEEKLDS-KNVQLAKVTAEG 225
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 55.6 bits (128), Expect = 9e-09
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 7/188 (3%)
Frame = +1
Query: 196 DSRFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQK 375
DSR F L Q + G + GI+ DG++L A+ + T + +++ +K
Sbjct: 6 DSRTTIFSPEGRLYQVEYALEAINHAGVAL-GIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
Query: 376 IHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHT-GRTVPVETAATL---LKRMLFR 543
++++ NM C AG AD + + A ++ Q L T +P E LK+ +
Sbjct: 65 LYHIGDNMLCAVAGLTADANILI-NYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQ 123
Query: 544 YQG--HIGAALVLGGVDR-TGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 714
Y G G + + G D G ++ P G+ ++G S + ++ +K D+
Sbjct: 124 YGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDI 183
Query: 715 NEEEGKKL 738
N +E +
Sbjct: 184 NLDEASAM 191
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 42.3 bits (95), Expect = 9e-05
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 8/207 (3%)
Frame = +1
Query: 214 FQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLAS 393
F N L Q + A A G T VGI DGV+L + + T + + +K+ +
Sbjct: 12 FSPNGKLVQIEY-ALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIG-ASLEKVCAITP 69
Query: 394 NMYCCGAGTAADTEMTTQSV--ASQLELQRLHTG----RTVPVETAATLLKRMLFRYQGH 555
++ +G D + +Q ++++ + + E A+ + +
Sbjct: 70 DIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRP 129
Query: 556 IGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKK 735
G +L++ G+D GP +Y + P G+ +G S AA E KR +E E
Sbjct: 130 FGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLE---KRYNDELELDD 186
Query: 736 LVRDAIAA--GIFNDLGSGSNVDLCVI 810
V AI A F + N+++ V+
Sbjct: 187 AVHTAILALKETFEGELTEDNIEIAVV 213
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 38.7 bits (86), Expect = 0.001
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Frame = +1
Query: 256 PKATKTGTTIVGIIYADG-VILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 432
P GTT+ I DG IL DTR+ ++ + ++H + ++ +G AD
Sbjct: 8 PYVQNGGTTVA--IAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADA 65
Query: 433 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGP-H 603
+ + +++L + R + ++ A +++ +L+ R+ + + G+D+ G
Sbjct: 66 LALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYY-VYTTVAGIDKEGKGE 124
Query: 604 IYCIYPHGSVDK 639
IY P GS ++
Sbjct: 125 IYSFDPVGSYER 136
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 33.9 bits (74), Expect = 0.031
Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 5/147 (3%)
Frame = +1
Query: 253 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 432
A KA + +T +GI DGVIL + T + N +I + ++ G D
Sbjct: 26 AYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVN-NRIGSVDRHIGIATTGFIPDG 84
Query: 433 EMTTQSVASQLELQRLHTGRTVPVETAATLLKR--MLFRYQGHI---GAALVLGGVDRTG 597
+ + + R + G +P A L LF + G + D G
Sbjct: 85 QHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEG 144
Query: 598 PHIYCIYPHGSVDKLPYATMGSGSLAA 678
PH+Y + P+G A G G A
Sbjct: 145 PHLYMVEPNGVYWGYNGAAAGKGRQVA 171
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 33.1 bits (72), Expect = 0.054
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Frame = +1
Query: 253 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 432
A +A K G+ VG++ +L A R E K K+ + ++ AG A D
Sbjct: 25 ALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQK---KLIRIDDHIGIAIAGLAPDA 81
Query: 433 EMTTQSVASQLELQRLHTGRTVPVETAAT-LLKRMLFRYQGH----IGAALVLGGVDRTG 597
+ + + + + R +PV + + ++ Q + G ++ G D +G
Sbjct: 82 RVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESG 141
Query: 598 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 693
PH+ P G V + +MGS S +A E
Sbjct: 142 PHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 32.7 bits (71), Expect = 0.071
Identities = 35/196 (17%), Positives = 82/196 (41%), Gaps = 12/196 (6%)
Frame = +1
Query: 271 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQS 450
TG++++ + +ADGV++ AD A+ ++ + +++ + N G +D + Q
Sbjct: 42 TGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQ-IQR 100
Query: 451 VASQLELQRLHTGRTVPVETA--ATLLKRMLFRYQGHIGA---ALVLGGVDRTGPHIYCI 615
+ +LE++ + G ++ + L ++L+ + + L++ GVD Y
Sbjct: 101 LLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVA 160
Query: 616 YP--HGSVDKLPYATMGSGSLAAM-----AVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 774
+ G+ P G A+ A + WK +++E + + + + + D
Sbjct: 161 FADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRWK-TLSKESARATIDECMRVLFYRD 219
Query: 775 LGSGSNVDLCVIRNTG 822
S + + I G
Sbjct: 220 ARSLNKFSVATITPEG 235
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 630 RSMRINAVNMRTGSVNTSQNQSSPYMTLIAKQH 532
+S+ + M+TGSVN +Q+Q M ++A Q+
Sbjct: 267 QSIPSGPMGMKTGSVNDTQSQQITLMNVLASQN 299
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 2.7
Identities = 29/105 (27%), Positives = 44/105 (41%)
Frame = +1
Query: 508 TAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAV 687
T T+ K G G L++ ++R SV KLP T+ + A
Sbjct: 2346 TCVTVCKAFSIIVSGDAGGNLIIWDLNRAE-----FVSSLSVYKLPIQTIAVNARNAEIA 2400
Query: 688 FEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTG 822
F G+ + GK LV+D ++ I+N+ S N+ LC TG
Sbjct: 2401 FSTGFYCCVVNVNGKILVKDKLSR-IYNE-NSDENI-LCSCFYTG 2442
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 615 NAVNMRTGSVNTSQNQSSPYMTLIAKQHSFQQCGSSF 505
N + M+ S+ T + + +PY L+A + CGS +
Sbjct: 861 NIIPMQKPSLTTHETKQNPYDLLVALDSDRKACGSLY 897
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,130
Number of Sequences: 5004
Number of extensions: 69394
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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