Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M17
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.53 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   1.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 618 INAVNMRTGSVNTSQNQSSPYMTLIAKQHSFQQCGSSFYWYSTSSM 481
           ++A  +   +VN +Q  +SP  T  + QHS     +S    +TSSM
Sbjct: 43  LSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSM 88


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 256 VQETLSEQEKHYVENSQXENPGT 188
           +QE   E  + YV+N +  NPGT
Sbjct: 500 IQEIYLEALRAYVDNRRRPNPGT 522


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 847 HKFLDXGQGQCYE*RTGQH*NLNPSH*IYQQQ 752
           H  +   QGQ       QH   +  H +YQQQ
Sbjct: 176 HPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQ 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,990
Number of Sequences: 438
Number of extensions: 5085
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)