Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M16
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.88 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    28   1.5  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    28   2.0  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   8.2  

>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +1

Query: 268 MTTPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSII 441
           M+TP   SN S SRTPS++    W    I  L+ + + SP +     +  SP +HS++
Sbjct: 279 MSTP--NSNHSRSRTPSSKKRTRWG-EEIIDLSKRRAVSPSIYYDLDKKCSP-IHSVM 332


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = +1

Query: 388 VMQQSTKRLSSPQLHSIIRPRTSSDNQPATSSGNQPSS 501
           V+Q++  ++ S  L  I+RP ++++ +  TSSGNQ SS
Sbjct: 435 VLQRAPGQVFSGTL-GILRPSSAANKERQTSSGNQGSS 471


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -3

Query: 810 SVNGTIIERRNFAPVTWLVSSFVFVGTEQPSILVGRTEIFRLHGHEIGHFLWGLLVSWLR 631
           ++    I   + A V  +  S + +  +QP++L+G+     +  +  GH L G L S ++
Sbjct: 91  AIKSNYISDMSKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLGGTLWSLIK 150

Query: 630 FAE 622
            +E
Sbjct: 151 ESE 153


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 355 PSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPRTSSDNQPATS 480
           P  N K + +       K+  S   HS++ P TSS+N  +TS
Sbjct: 116 PQSNRKPTEAYRRNSPVKKSFSRPSHSLLYPYTSSNNMTSTS 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,467
Number of Sequences: 5004
Number of extensions: 58358
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)