Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M16
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical
           protein ZC53.1 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 280 IMTSNQSASRTP--SNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPRT 453
           ++T +   S+ P  S R     +    PS++ +  +       T   + P+  + ++P T
Sbjct: 255 LVTDDDGTSQQPRGSARGDNKRKSPQEPSMSYEGPKPKHSTHETPEDAKPEAFTSVKPPT 314

Query: 454 SSDNQPATSSGNQPS 498
           SS NQ   +  N+PS
Sbjct: 315 SSGNQSIRAPMNEPS 329


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 24/77 (31%), Positives = 36/77 (46%)
 Frame = +1

Query: 271 TTPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPR 450
           ++P  TS  +A  +PS+  T     + +PS ++  S  P+   S    SSP   S   P 
Sbjct: 12  SSPAATSPSTAVTSPSSLGTSS---SPLPS-SISTSALPIASSSAS--SSPSAASSTTPV 65

Query: 451 TSSDNQPATSSGNQPSS 501
             S +   +SSG  PSS
Sbjct: 66  VLSSSTIQSSSGTFPSS 82


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = +1

Query: 298 SASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPRTSSDNQPAT 477
           S++ +P        R A  P++++  +++P+    T+++S+P LH+ +    SS   P  
Sbjct: 68  SSAHSPYGSVDESSRTAVSPAMDMVSNQAPI---HTRQVSAPNLHTSVNNGQSSATVPHP 124

Query: 478 SSGN 489
           S  N
Sbjct: 125 SHHN 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,718
Number of Sequences: 27780
Number of extensions: 335120
Number of successful extensions: 879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)