Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M14
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 94 2e-20
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 31 0.28
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 3.5
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 27 3.5
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 4.6
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 4.6
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 26 8.1
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 8.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 8.1
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 94.3 bits (224), Expect = 2e-20
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 1/199 (0%)
Frame = +2
Query: 131 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 310
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 311 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 490
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 491 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGI 667
A+ L EP + RQ D +V++ + KA K+K D L +T++FL+ GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182
Query: 668 ELVAARGRIKISNTLGVSL 724
LV G+I++ NTL L
Sbjct: 183 VLVGLGGKIRVDNTLRARL 201
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 717 SRLELIAQQLLPEIRNALFG 776
+RLE++ ++ LPEIR LFG
Sbjct: 199 ARLEIVKEEALPEIRRLLFG 218
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 659 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 540
H R +SS + RLS +H S++C + G P PCR
Sbjct: 77 HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 389 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 514
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 3.5
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +2
Query: 407 LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 559
++EA K KD K L +L T+ + + +E T+TI V DK E
Sbjct: 745 VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804
Query: 560 SLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 658
+ LGK D N + DV+ V E + D C
Sbjct: 805 NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 520 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFVEYITYMIFTHFQYLQTSLVQHV 344
+S F +EESL K + F + + S ++ +E I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 130 RHGCCLFLTPLTRKTADIEPR 68
RHGCC+ L R DI+ R
Sbjct: 619 RHGCCILQRCLDRTNGDIQER 639
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 778 RPKRALRISGSSCWAISSKRDSQSVADLDTSPGCNQLDSTTGVGRQKVLGVD 623
R RA R+ C+ + ++R + D+ TSP + + T V K LG++
Sbjct: 741 RAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGIN 792
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 685 PGC-NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 572
PG N LDS G R+K H + + ++L++C G+
Sbjct: 22 PGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 437 LQPGAC-ELRRVHYVHDLHALSVPSDELGSACSKIGSSSEV 318
L+PG C LR + +HA+ V ++ C GSS+ +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARI 202
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 592 LVVCLGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 446
L+V EQG ++ D+ +SG HE+ + L N DQQL Q +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,705
Number of Sequences: 5004
Number of extensions: 55349
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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