Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M14
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   157   1e-38
U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set (trithorax/...    30   2.5  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    30   2.5  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    30   2.5  
Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  157 bits (381), Expect = 1e-38
 Identities = 85/194 (43%), Positives = 111/194 (57%)
 Frame = +2

Query: 131 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 310
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 311 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 490
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 491 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIE 670
            L QL+E  V +R R+ D  LVE LL +     + +      + +D +NFL  ++ GG+E
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVE 182

Query: 671 LVAARGRIKISNTL 712
           L A  G+IK+S+TL
Sbjct: 183 LSARAGKIKVSSTL 196



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +3

Query: 684 GDVSRSATLWESRLELIAQQLLPEIRNALFG 776
           G +  S+TL ESRLELIA Q++P++R ALFG
Sbjct: 188 GKIKVSSTL-ESRLELIANQIVPQVRTALFG 217


>U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           b protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 790 TVRXRPKRALRISGSSCWAISSKRDSQSVADLDTSPGCNQLDSTTGVGRQK 638
           +V   P+R +  S SS  A +S R S+  +D D++PG  Q   T+ +   K
Sbjct: 117 SVAPTPQRTVSTSSSSSSAATSARVSEDESDSDSTPGEVQRRKTSVLSNDK 167


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 2, isoform
            c protein.
          Length = 1510

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 790  TVRXRPKRALRISGSSCWAISSKRDSQSVADLDTSPGCNQLDSTTGVGRQK 638
            +V   P+R +  S SS  A +S R S+  +D D++PG  Q   T+ +   K
Sbjct: 888  SVAPTPQRTVSTSSSSSSAATSARVSEDESDSDSTPGEVQRRKTSVLSNDK 938


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 2, isoform
            a protein.
          Length = 1507

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 790  TVRXRPKRALRISGSSCWAISSKRDSQSVADLDTSPGCNQLDSTTGVGRQK 638
            +V   P+R +  S SS  A +S R S+  +D D++PG  Q   T+ +   K
Sbjct: 885  SVAPTPQRTVSTSSSSSSAATSARVSEDESDSDSTPGEVQRRKTSVLSNDK 935


>Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical
           protein M199.2 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 791 YGKXASEEGVTYLRQQLLGDQLQARLPEC 705
           YGK ASEE   ++R++L  D+    L EC
Sbjct: 423 YGKDASEEAAKWMREEL--DKKDGELKEC 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,518,102
Number of Sequences: 27780
Number of extensions: 329272
Number of successful extensions: 1022
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)