Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M13
(1056 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.1
Identities = 28/113 (24%), Positives = 28/113 (24%), Gaps = 4/113 (3%)
Frame = +1
Query: 541 PPPXXXXXAXPPPRXXGGXPPPAKPXXXTXXXXXXXXXXXXXXXRXXXRRPXPTPXXAPP 720
PP A PP G PP KP P P P APP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP-SVAAPPVPAPSGAPP 1160
Query: 721 ---PXXXXXXXXXXXXXXXP-PXRAXXTPXRXXEXXPXPXDAPPXGXPPXPXP 867
P P P A P P P G PP P P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 28.7 bits (61), Expect = 1.5
Identities = 28/130 (21%), Positives = 31/130 (23%), Gaps = 2/130 (1%)
Frame = +1
Query: 538 PPPPXXXXXAXPPPRXXGGXPPPAKPXXXTXXXXXXXXXXXXXXXRXXXRRPXPTPXXAP 717
PP P A P P+ PP P P P+ P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 718 PPXXXXXXXXXXXXXXXPPXRAXXT--PXRXXEXXPXPXDAPPXGXPPXPXPXXXXXRXP 891
P PP A + P P PP PP P P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Query: 892 XAXTNPXKTT 921
T P T
Sbjct: 1212 PPSTAPPVPT 1221
Score = 27.5 bits (58), Expect = 3.4
Identities = 32/141 (22%), Positives = 34/141 (24%), Gaps = 7/141 (4%)
Frame = +1
Query: 541 PPPXXXXXAXPPPRXXGGXPPPAKPXXXTXXXXXXXXXXXXXXXRXXXRRPXPTPXXAPP 720
PP A PP G PP KP P P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP-PVPAPSSGIP 1179
Query: 721 PXXXXXXXXXXXXXXXPPXRAXXTPXRXX--EXXPXPXDAPPX-----GXPPXPXPXXXX 879
P PP A P P P APP G PP P P
Sbjct: 1180 PVPKPAAGVPPVP---PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKA 1236
Query: 880 XRXPXAXTNPXKTTXPPRXXP 942
P + + P P
Sbjct: 1237 PPVPAPSSEAPSVSTPRSSVP 1257
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.5
Identities = 26/115 (22%), Positives = 28/115 (24%), Gaps = 3/115 (2%)
Frame = +1
Query: 532 PXPPPPXXXXXAXPP---PRXXGGXPPPAKPXXXTXXXXXXXXXXXXXXXRXXXRRPXPT 702
P PPPP PP PPP P + P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSN------AAGSIPLPPQGRSAPPPPP 365
Query: 703 PXXAPPPXXXXXXXXXXXXXXXPPXRAXXTPXRXXEXXPXPXDAPPXGXPPXPXP 867
P AP PP P R P +A PP P P
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 769 PPXRAXXTPXRXXEXXPXPXDAPPXGXPPXPXP 867
PP A P P P AP G PP P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 532 PXPPPPXXXXXAXPPPRXXGGXPPPA 609
P PPPP A PPP PPPA
Sbjct: 762 PPPPPPPGVAGAGPPPPP---PPPPA 784
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Frame = +1
Query: 532 PXPPPPXXXXXAXPPPRXXG----GXPPPAKP 615
P PPP PPP G G PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 532 PXPPPPXXXXXAXPPPRXXGGXPPPAKP 615
P PPPP A PP PPA P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP 1909
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -1
Query: 606 GXGXPPXXPGGXGGXXXXXXXXXXXXXXXXGXGXPCXLXXGXGG 475
G G PP PGG GG G P G GG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.145 0.496
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,630
Number of Sequences: 5004
Number of extensions: 20934
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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