Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M12
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 372 e-103
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.004
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.27
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.5
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 4.4
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 4.4
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 7.7
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 372 bits (915), Expect = e-103
Identities = 174/257 (67%), Positives = 205/257 (79%)
Frame = +2
Query: 80 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 259
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 260 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 439
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 440 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 619
LCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 620 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 799
+TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241
Query: 800 GIRLTIAEERDKRIAXK 850
GIRL+IAEERDKR+A K
Sbjct: 242 GIRLSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/63 (34%), Positives = 25/63 (39%)
Frame = +1
Query: 652 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXGHPPHHRRGAG 831
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 832 QAH 840
+ H
Sbjct: 460 EHH 462
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 652 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARXGHPPHH 816
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 37.1 bits (82), Expect = 0.017
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = +1
Query: 643 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARXGHPPHHR 819
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 820 RGAGQAHRXQGRRA 861
G H + A
Sbjct: 522 HGTHHGHHGEHHHA 535
Score = 35.5 bits (78), Expect = 0.050
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +1
Query: 691 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARXGHPPHHRRGAGQAH 840
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 35.5 bits (78), Expect = 0.050
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = +1
Query: 622 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 792
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 793 RXGHPP---HHRRGAGQAH 840
H HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 34.7 bits (76), Expect = 0.088
Identities = 28/113 (24%), Positives = 36/113 (31%), Gaps = 2/113 (1%)
Frame = +1
Query: 508 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACG-HHRVPRETSR 681
HH + + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 682 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXGHPPHHRRGAGQAH 840
H H HG H H H G G H H P H G+ H
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 568
Score = 33.1 bits (72), Expect = 0.27
Identities = 29/115 (25%), Positives = 38/115 (33%), Gaps = 4/115 (3%)
Frame = +1
Query: 508 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 675
HH + + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 676 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXGHPPHHRRGAGQAH 840
+ AH G HG H H H H G H + H HH AH
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPH---HEHHEHHGDHHHGSHGVHHGHHGTHHSLAH 666
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = +1
Query: 652 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXGHPPHHRRGAG 831
HH P H G HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 832 QAHRXQG 852
AH G
Sbjct: 690 GAHHEHG 696
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +1
Query: 652 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXGHPPHHRRGAG 831
HH P H +H HG H H GH G H H HH G G
Sbjct: 567 HHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEH-----GVHHGHHGAGYG 621
Query: 832 QAHRXQG 852
H G
Sbjct: 622 AHHGHHG 628
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = +1
Query: 652 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXG-HPPHHRRGA 828
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 829 GQAHRXQ 849
H +
Sbjct: 515 HHGHHGE 521
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/115 (22%), Positives = 35/115 (30%), Gaps = 4/115 (3%)
Frame = +1
Query: 508 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 684
HH + + + H P H ++ ++G H HG HH P
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGE-------HHHAPAHHGHH 542
Query: 685 LRHCAHQGLHG---THLRHEVEQRVHNRQGHEGVHLAAARXGHPPHHRRGAGQAH 840
H H G HG + H H+ H G H H HH H
Sbjct: 543 GEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHGH 595
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = +1
Query: 691 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXGH--PPHHRRGAGQAHRXQG 852
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 29.5 bits (63), Expect(2) = 0.49
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 691 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARXGHPPHH 816
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 21.4 bits (43), Expect(2) = 0.49
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +1
Query: 805 PPHHRRGAGQAHRXQGRRA 861
PPH R G H G R+
Sbjct: 450 PPHRRGGHCHHHHHNGHRS 468
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 392 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 523
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 610 LVYDHGRP*LGACGHHRVPRETSRLLRH 693
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 610 LVYDHGRP*LGACGHHRVPRETSRLLRH 693
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 549 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 385
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,352,945
Number of Sequences: 27780
Number of extensions: 499892
Number of successful extensions: 1503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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