Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M11
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 81 2e-16
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 56 7e-09
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 52 8e-08
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 44 2e-05
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 28 2.0
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 3.5
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 27 4.7
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 6.1
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 81.0 bits (191), Expect = 2e-16
Identities = 43/120 (35%), Positives = 67/120 (55%)
Frame = +2
Query: 374 FLLQLQGSILIASXNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTL 553
F ++ G + N K V+FN+ +E+ +N L +++L T+
Sbjct: 83 FTVKNPGKYMYCFYNDALDGESKEVLFNVH---GVIYISDEDLDANNPLLGKVRQLHDTI 139
Query: 554 RTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFFEVQRVV 733
+KH+QEY R+RIHR+ ESTN RV WSI + +L+ + + Q++YLKR FEV+RVV
Sbjct: 140 SKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFEVKRVV 199
Score = 61.3 bits (142), Expect = 2e-10
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +1
Query: 172 VSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPDGNVIHKAER 351
+S + + +T+ H ECFYEN+ + ++ ++++ GG + + I P G ++H+
Sbjct: 16 ISVVFGHGITLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVP 75
Query: 352 ESSGIYTFSAPTAGKYTYCF 411
S Y+F+ GKY YCF
Sbjct: 76 NSMAQYSFTVKNPGKYMYCF 95
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 56.0 bits (129), Expect = 7e-09
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = +2
Query: 497 NEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLV 676
+E + L D + L T L +I +Q + R+ R +ES NSRVV W+I + VLLV
Sbjct: 137 SEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVVLLV 196
Query: 677 MTIGQVYYLKRFFEVQRVV 733
I Q+ +L+RFF +++V
Sbjct: 197 TCIWQLSHLQRFFVKEKLV 215
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 52.4 bits (120), Expect = 8e-08
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +2
Query: 368 IHFLLQLQGSILIASXNKMSSMTPKVVMFNL----EIGEPQTKSGNENEADHNKLEDMIK 535
+ F L+ +G N MS+ T K+V + E+ P + + ++ +
Sbjct: 83 VFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENELSLPALTRDEAKDYKKDSMQSTVL 142
Query: 536 ELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFF 715
E++T L I Q Y + R+ + S +ST +R+ +S+ E+ +++ ++ QV+ +K FF
Sbjct: 143 EISTALSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVVALSALQVFIVKTFF 202
Query: 716 E 718
+
Sbjct: 203 K 203
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 148 LVVTLLNLVSNAYSYTVTVDAHAEECFY-ENVEADTKLGLSFEIAEGGFLDIDVIILGPD 324
+ + LL +++A T ++ ++C+Y ++ K ++ + GG D+D +I P
Sbjct: 9 ITLFLLASLASAIELTFKLENQEKQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPS 68
Query: 325 GNVIHKAERESSGIYTFSAPTAGKYTYCF 411
+ ++ F+ G+Y +CF
Sbjct: 69 QKTVALGKKRRQADVFFTLEEKGEYEFCF 97
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +2
Query: 500 EADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVM 679
EAD + D I+E IK Y+Q R+ R+ NESTN RV ++ L V+
Sbjct: 145 EADIRRARDFIEE-------IKGKIYYLQAREARFRNTNESTNERVKNFAYLTFISLFVL 197
Query: 680 TIGQVYYLKRFFEVQRVV 733
I Q+ YL+ FF+ + ++
Sbjct: 198 VIWQILYLRSFFQRKHLI 215
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -2
Query: 687 PIVMTSSTEASNID---HITTREFVLSFIERWIRSRTCIYS*SCLIVL 553
P +T + EA ID + E V+ F+E SR C+Y SC+ +L
Sbjct: 195 PFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCVNLL 242
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +2
Query: 635 VVMWSIFEASVLLVM-TIGQVYYL-KRFF 715
+V+W +F+ VLLV T+G ++L K+FF
Sbjct: 560 LVLWMLFQVLVLLVQDTLGPRFFLPKKFF 588
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 485 SGNENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRS 610
S N+N +++ ++ D + ATT +T +E ++ R + S
Sbjct: 91 SNNQNPSNNKEMSDKESDSATTTQTFSVPEELLRARTTANNS 132
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 185 YALLTRFNKVTTSHCDILKYFILLNV 108
YA+L N +T++ CD Y +L+ V
Sbjct: 1026 YAILNILNLLTSNECDEFDYSVLMKV 1051
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,881
Number of Sequences: 5004
Number of extensions: 69926
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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