Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M11
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 52 6e-07
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 45 9e-05
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 43 3e-04
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 43 4e-04
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 40 0.002
08_02_0963 + 23068851-23069042,23069262-23069414,23069590-230696... 36 0.032
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 34 0.17
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 33 0.23
06_01_0751 + 5630036-5630233,5630623-5630718,5631420-5631629,563... 33 0.30
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 52.0 bits (119), Expect = 6e-07
Identities = 26/93 (27%), Positives = 47/93 (50%)
Frame = +2
Query: 437 PKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSIN 616
P+ V F + +G + + + + I EL L ++ +Q+Y++ R+ HR N
Sbjct: 109 PETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTN 168
Query: 617 ESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFF 715
EST RV+ ++I E + + QV Y++R F
Sbjct: 169 ESTRRRVMFYTIAEYLAFMGASALQVVYIRRLF 201
Score = 37.5 bits (83), Expect = 0.014
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +1
Query: 148 LVVTLLNLVSNAYSYTVTVDAHAEECFYENV--EADTKLGLSFEIAEGGFL------DID 303
+VV + A S TVT EC +E V E DT G +F + + ID
Sbjct: 12 VVVAVAAWRGEALSVTVT----DTECIHEFVPYEGDTVSG-NFVVVDHDIFWSSDHPGID 66
Query: 304 VIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 411
+ + P GN ++ + +S + F AP G Y +CF
Sbjct: 67 LTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCF 102
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 44.8 bits (101), Expect = 9e-05
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +2
Query: 518 LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVY 697
+E +K+L T+ +I + Y++ R+ + +N TNSR+ F ++ L + Q++
Sbjct: 161 MEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAWLGFFSLAICLSVAGLQLW 220
Query: 698 YLKRFFEVQRVV 733
+LK FFE ++++
Sbjct: 221 HLKNFFERKKLL 232
Score = 34.7 bits (76), Expect = 0.099
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 298 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 411
+ + + P GN +H +E SG + F+A AG Y CF
Sbjct: 86 VSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACF 123
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 43.2 bits (97), Expect = 3e-04
Identities = 28/115 (24%), Positives = 56/115 (48%)
Frame = +2
Query: 374 FLLQLQGSILIASXNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTL 553
F++Q +G NK S + V F++ +G + + L + I +L L
Sbjct: 92 FIVQKRGVHRFCFTNK--SPYHETVDFDVHVGHFSYFDQHAKDEHFAPLFEQIAKLDEAL 149
Query: 554 RTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFFE 718
I+ +Q +++ + +NE+ + R V ++ E++ L+ ++ QVY L+R FE
Sbjct: 150 YNIQFEQHWLEAQTDRQAILNENMSRRAVHKALLESAALIAASVIQVYLLRRLFE 204
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Frame = +1
Query: 148 LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEAD-TKLGLSFEIAEGGFL------DIDV 306
LV+ + L+ A + +D EECF NVE + + +SF + + +D+
Sbjct: 12 LVLCTVALLRPAAAIRFVIDR--EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDL 69
Query: 307 IILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFX**NVIHDT 438
++ P+G + + ++S + F G + +CF + H+T
Sbjct: 70 VVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYHET 113
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 42.7 bits (96), Expect = 4e-04
Identities = 19/72 (26%), Positives = 43/72 (59%)
Frame = +2
Query: 518 LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVY 697
+E +K+L T+++I + Y++ R+ +++N+ TNSR+ + L + Q++
Sbjct: 159 MEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLGFLSLGICLSVAGLQLW 218
Query: 698 YLKRFFEVQRVV 733
+LK FFE ++++
Sbjct: 219 HLKTFFERKKLL 230
Score = 36.3 bits (80), Expect = 0.032
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 298 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 411
I + + P GN +H AE SG + F+A AG Y CF
Sbjct: 84 ISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACF 121
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2
Query: 518 LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVY 697
L + I +L L I+ +Q +++ + +NE+ + R V + FE++ L+ ++ QVY
Sbjct: 137 LFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKAFFESAALIAASVVQVY 196
Query: 698 YLKRFFE 718
L R FE
Sbjct: 197 LLHRLFE 203
Score = 39.5 bits (88), Expect = 0.003
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Frame = +1
Query: 130 LRISQWLVVTLLNLVSNAYSYTVTVDAHAEECFYENV--EADTKLGLSFEIAEGG----F 291
LR+ LV+ +L + A + +D EECF NV E DT + +SF + + +
Sbjct: 5 LRLGFLLVLCILAFLRPAAAIRFVIDR--EECFSHNVDYEGDT-VHVSFVVIKAETPWHY 61
Query: 292 LD--IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCFX**NVIHDT 438
+ +D+++ P+GN IH + + S + F G + +CF + H+T
Sbjct: 62 TEDGVDLVVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFCFTNKSPYHET 112
>08_02_0963 +
23068851-23069042,23069262-23069414,23069590-23069666,
23069744-23069762,23070182-23070202
Length = 153
Score = 36.3 bits (80), Expect = 0.032
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Frame = +1
Query: 148 LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGF-----LDIDVI- 309
L + L LV++ + + + A +CF E ++++ + ++I G+ L I VI
Sbjct: 8 LALALWCLVADGEAVWMELSTTATKCFSERIQSNVVVIGDYDILFDGYPTRPILSIQVIL 67
Query: 310 -----ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 411
+ P G V+H E+ G ++F+ G Y CF
Sbjct: 68 GLLLQVTSPYGKVLHHREKVMQGQFSFNTAEPGVYLACF 106
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +1
Query: 235 NVEADTKLGLSFEIAEGGFLDIDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 411
NV L +E I V + P GN +H E + G + F+ AG Y CF
Sbjct: 51 NVVVLADYALMYESHPSSHPTIAVKVTSPYGNTLHHNENATVGQFAFTTSEAGNYLACF 109
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 33.5 bits (73), Expect = 0.23
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 310 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 411
+ P G+++H ++ S+G ++F+ AG Y CF
Sbjct: 120 VTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACF 153
>06_01_0751 +
5630036-5630233,5630623-5630718,5631420-5631629,
5631735-5631811,5632204-5632222,5632304-5632348
Length = 214
Score = 33.1 bits (72), Expect = 0.30
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 310 ILGPDGNVIHKAERESSGIYTFSAPTAGKYTYCF 411
+ P GN +H E ++G + F+ AG Y CF
Sbjct: 99 VTSPYGNTVHHNENATTGQFAFTTSEAGNYLACF 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,416
Number of Sequences: 37544
Number of extensions: 388078
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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