Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M11
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...   146   1e-35
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    63   3e-10
AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    55   8e-08
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    50   3e-06
Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF100673-4|AAP13734.2|  438|Caenorhabditis elegans Hypothetical ...    30   2.5  

>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score =  146 bits (355), Expect = 1e-35
 Identities = 67/124 (54%), Positives = 95/124 (76%), Gaps = 4/124 (3%)
 Frame = +2

Query: 374 FLLQLQGSILIASXNKMSSMTPKVVMFNLEIGEPQTKS----GNENEADHNKLEDMIKEL 541
           F   + G       NKMS+MTPK VMF +EI EP  ++     N++ AD+ KLE+M++EL
Sbjct: 80  FAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMVREL 139

Query: 542 ATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFFEV 721
           ++ L ++KH+QEYM+VR+R+HR+INE+TNSRVVMW+ FEA VL+ MT+GQ++YLKRFFEV
Sbjct: 140 SSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFFEV 199

Query: 722 QRVV 733
           + +V
Sbjct: 200 RTMV 203



 Score =  105 bits (253), Expect = 3e-23
 Identities = 49/89 (55%), Positives = 64/89 (71%)
 Frame = +1

Query: 145 WLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPD 324
           W++  L   V+ A SY + VDA+ E+CF++ + + TK+GL FE+AEGGFLDIDV I GPD
Sbjct: 6   WILAVLF--VTPAASYFIHVDANEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGPD 63

Query: 325 GNVIHKAERESSGIYTFSAPTAGKYTYCF 411
              I+K ERESSG +TF+A   G YTYCF
Sbjct: 64  NKEIYKGERESSGKFTFAAHMDGVYTYCF 92


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
 Frame = +2

Query: 368 IHFLLQLQGSILIASXNKMSSMTPKVVMFNLEIGEPQTKSGNENEADH--NKLEDMIKEL 541
           I+F  +++G+      N+ S+ + K+V  + + G+         +  H   +LE+    +
Sbjct: 79  INFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAAVTQGAHAMTQLENYAVAI 138

Query: 542 ATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFFEV 721
              LRTI   Q + ++R+   R   E  N RV++WS+ +++V++ + IGQV+ LK FF  
Sbjct: 139 GDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSAVVVFIGIGQVFLLKSFFND 198

Query: 722 QR 727
           +R
Sbjct: 199 KR 200



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 26/88 (29%), Positives = 46/88 (52%)
 Frame = +1

Query: 148 LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPDG 327
           +V ++L  +  +   T  +  +A +CFYE+++ D      F++  GG  D+D+II  P+G
Sbjct: 6   IVSSILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDPNG 65

Query: 328 NVIHKAERESSGIYTFSAPTAGKYTYCF 411
            V++K  ++      F A   G Y  CF
Sbjct: 66  KVLYKDTKKQYDSINFKAEVEGTYKACF 93


>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 27/74 (36%), Positives = 44/74 (59%)
 Frame = +2

Query: 512 NKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQ 691
           N+L+  I++L   +  I  +Q Y + R+   R  +ESTNSRV  WSI +  VL +    Q
Sbjct: 138 NELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQ 197

Query: 692 VYYLKRFFEVQRVV 733
           + +L+ FFE +++V
Sbjct: 198 MRHLRGFFEAKKLV 211


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = +2

Query: 518 LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVY 697
           LE  ++ L     +I  D  +M+ R+   R+ NESTNSRV+  SIF    LL + I QV 
Sbjct: 132 LEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSIFSMLCLLGLAIWQVL 191

Query: 698 YLKRFFEVQRVV 733
           +L+ +F+ ++++
Sbjct: 192 FLRNYFKSKKLI 203


>Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical
           protein K08E4.6 protein.
          Length = 234

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +1

Query: 169 LVSNAYSYTVTVDAHAEECFYENVE-ADTK-LGLSFEIAEGGFLDIDVIILGPDGNVIHK 342
           ++   Y +TV V A   +CF++ V+ A  K L + +++ +GG L+I+ +IL    N++ +
Sbjct: 18  ILCGEYDFTVEVPAGKFQCFFQPVDLAKHKTLEVDYQVIDGGDLNINFMIL-HGANILKQ 76

Query: 343 AERESSGIYTFSAPTAGKYTYCF 411
            + +  G +       G Y  CF
Sbjct: 77  DQLKVDGSHRIELNQPGDYQVCF 99



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = +2

Query: 539 LATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMTIGQVYYLKRFFE 718
           +   L  +++ Q  ++  +   R++  +   RV  WS+    V++ +   QV+ ++  FE
Sbjct: 160 IKNNLNKVEYHQALLRAHEARDRAVMSANFDRVTFWSVVHTLVMVGVAGVQVFMIRSLFE 219


>AF100673-4|AAP13734.2|  438|Caenorhabditis elegans Hypothetical
           protein Y66H1B.5 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 268 FEIAE-GGFLDIDVIILGPDGN--VIHKAERESSGIYTFSAPT--AGKYTYCF 411
           F++ + G    I+  + GPDG   + H    E +GIY  S PT  AG+Y   F
Sbjct: 269 FDVRDCGNVKKIESRVFGPDGKERLNHVRSTEQNGIYDVSFPTDMAGEYCVVF 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,694,932
Number of Sequences: 27780
Number of extensions: 391850
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)