Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M10
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.042
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.2  
12_02_1188 + 26801833-26802225                                         30   2.8  
03_06_0149 - 31987183-31987630,31987813-31987874                       30   2.8  
12_01_0816 + 7502669-7503145                                           29   4.8  
06_01_0438 + 3110703-3111945,3112486-3113057                           29   6.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369...    28   8.5  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 725 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 618
           R R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 542 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 688
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 695 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 597
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 731 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETP 621
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 822 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 691
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 156 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 55
           HC + +VC +S+  L++S    P+    ++AA+P
Sbjct: 64  HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>09_02_0057 -
           3697255-3698116,3698191-3698351,3698442-3698636,
           3698728-3699126,3699208-3699477,3700102-3700695
          Length = 826

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -2

Query: 846 DSDDSYRIRRSGR-AERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AA 670
           D ++  R RR G   + G R+ SP  SE P P       S  +APR     R +  R A 
Sbjct: 58  DDEEESRSRRHGHHRDGGRRSLSP--SESPPPPAAKRERSSSRAPRDSVERRDSADREAP 115

Query: 669 GSEQESARGSXPGGN 625
                  +G   GGN
Sbjct: 116 PPSSRKRKGHEGGGN 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,000,510
Number of Sequences: 37544
Number of extensions: 505804
Number of successful extensions: 1423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)