Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M09
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   1.2  
05_01_0570 + 5061600-5062142,5062790-5062972                           29   3.7  
07_01_0479 + 3606663-3607448                                           29   6.5  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    29   6.5  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    28   8.6  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    28   8.6  
04_01_0002 - 73522-74064                                               28   8.6  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = -1

Query: 786  PXXWGXSGIXGPPAXPERXGXPAXPGSRGKXEEAPKNAKPPLPAG 652
            P   G  G+ GPP  P     P  PG  G     P     P P G
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPG 1231


>05_01_0570 + 5061600-5062142,5062790-5062972
          Length = 241

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -2

Query: 794 GXXXXXGGGAXXPVRPXARKXPEXXRSQGAEGXRKRPPKTQNPLSPR 654
           G     GG     VR  AR+ P    + G  G  +RP  T  P   R
Sbjct: 154 GRGDGVGGARGRAVRGSARRRPRKEETTGINGTARRPTSTPCPTEAR 200


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 753 PPAXPERXGXPAXPGSRGKXEEAPKNAKPPLPAGWP 646
           PPA P     P  P  RG     P   +P +P G P
Sbjct: 194 PPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPP 229


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 756 GPPAXPERXGXPAXPGSRGKXEEAPKNAKPPLPAGWP 646
           G P  P+  G P  P   G+    P   +P  P G+P
Sbjct: 274 GQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPPGYP 310


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 723 PAXPGSRGKXEEAPKNAKPPLPAGWP 646
           P  PG RG     P  A+PP PA  P
Sbjct: 185 PIIPGIRGAPPVVPPTARPPTPAVTP 210


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -1

Query: 753 PPAXPERXGXPAXPGSRGKXEEAPKNAKPPLPAG 652
           PPA P     P  P + G    AP    P  PAG
Sbjct: 656 PPAPPIAGAAPPPPMANGAAAAAPPGGNPAPPAG 689


>04_01_0002 - 73522-74064
          Length = 180

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 607 QGEVWEVFXALXNRPPRGERGFCVF 681
           +GE WE +  +   PPRGER    F
Sbjct: 47  RGERWEYYMTVKINPPRGERDMYYF 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,657,792
Number of Sequences: 37544
Number of extensions: 299777
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)