Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M08
(971 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 82 2e-14
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 4e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 55 3e-06
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 48 3e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.003
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.055
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 40 0.073
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.096
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 6.3
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 6.3
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 6.3
UniRef50_P22534 Cluster: Endoglucanase A precursor; n=38; cellul... 33 8.3
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 81.8 bits (193), Expect = 2e-14
Identities = 58/119 (48%), Positives = 64/119 (53%)
Frame = +3
Query: 399 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 578
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76
Query: 579 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGEXDRTIKIPGVXPGSSLVRSPVPTLXLP 755
RPR RFSIGSAPLTSI K DAQ+ GGE + K P P LV L LP
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFP---LVAPSCALLFLP 129
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 4e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -1
Query: 575 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 462
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 375 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 542
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 54.8 bits (126), Expect = 3e-06
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Frame = +3
Query: 567 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGEXDR----TIKIPGVXPGSSLVRSP 734
SK+ T R RFSIGSAPLTSITKIDAQVRGGE + T + P P +L+ P
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 735 VPTLXLPDT 761
LPDT
Sbjct: 62 ---CRLPDT 67
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 48.4 bits (110), Expect = 3e-04
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +3
Query: 585 VKRPRCWRFSIGSAPLTSITKIDAQVRGGEXDRTIK 692
V+ PR RFSIGSAPLTSITK DAQ+ GGE + K
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYK 79
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.003
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 178 DPDMIRYIDEFGQTTTRMQ 234
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 494 HSKAVIRLSTESGDNAGKNM 553
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.055
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 373 SALMNRPTRGERRFAYW 423
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 40.3 bits (90), Expect = 0.073
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -1
Query: 779 RXRKADSIR-KRQGRNRRAHEGASRGNAWYLYSPVGF 672
+ +KA+ + KRQGRNRRAHEGA+ + SPVGF
Sbjct: 58 KGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGF 94
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.096
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -2
Query: 445 ERGSGRAPNTQTASPRALADSLMQ 374
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 6.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 584 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 462
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 6.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 256 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 423
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 6.3
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -3
Query: 336 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 172
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_P22534 Cluster: Endoglucanase A precursor; n=38; cellular
organisms|Rep: Endoglucanase A precursor - Caldocellum
saccharolyticum (Caldicellulosiruptor saccharolyticus)
Length = 1742
Score = 33.5 bits (73), Expect = 8.3
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3
Query: 678 DRTIKIPGVXPGSSLVRSPVPTLXLPDTVRLSPSGTWPFS*PPVXSXXGSVXXLXXPTPS 857
D IK+ G PG+S V SP PT + T +P+ T + P + +V PTP+
Sbjct: 626 DEDIKVWGEEPGTSGV-SPTPTASVTPTPTPTPTATPTPTPTPTVTPTPTVTATPTPTPT 684
Query: 858 P 860
P
Sbjct: 685 P 685
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,529,841
Number of Sequences: 1657284
Number of extensions: 12620613
Number of successful extensions: 33620
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33604
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 90631794594
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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