Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M08
         (971 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +3

Query: 522 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQV------RGGEX 677
           +  GI +E++ E   SKR      P   +FS+ S  +PL S+ ++  Q+      + G  
Sbjct: 19  EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76

Query: 678 DRTIKIPGVXP 710
                +PG  P
Sbjct: 77  GTNAGVPGAFP 87


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = +3

Query: 693  IPGVXPGSSLVRSPV--PTLXLPDTVRLSPSGTWPFS*PPVXSXXGSVXXLXXPTPSP 860
            +P   P SS   +P   P    P +   SPS T P S  PV +       L  P P P
Sbjct: 1414 VPSPPPSSSRFSTPPVSPVSSCPSSRFSSPSATRPQSPDPVPAAPAENCDLPPPPPEP 1471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,527
Number of Sequences: 27780
Number of extensions: 290571
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)