Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M05
         (1089 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus...    44   0.009
UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine pneumot...    40   0.11 
UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2; ...    39   0.26 
UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine polyoma...    38   0.45 
UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Re...    36   2.4  
UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|R...    36   2.4  
UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster polyom...    35   3.2  

>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
           Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
           (SV40)
          Length = 352

 Score = 43.6 bits (98), Expect = 0.009
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +1

Query: 259 GGANQRTAPQWMLPLLLG 312
           GGANQRTAPQWMLPLLLG
Sbjct: 284 GGANQRTAPQWMLPLLLG 301


>UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine
           pneumotropic virus|Rep: Capsid protein VP2 - Murine
           polyomavirus (strain Kilham) (MPyV)
          Length = 341

 Score = 39.9 bits (89), Expect = 0.11
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 259 GGANQRTAPQWMLPLLLG 312
           GGANQR+AP WMLPLLLG
Sbjct: 272 GGANQRSAPDWMLPLLLG 289


>UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2;
           Goose hemorrhagic polyomavirus|Rep: Putative
           uncharacterized protein - Goose hemorrhagic polyomavirus
          Length = 326

 Score = 38.7 bits (86), Expect = 0.26
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 259 GGANQRTAPQWMLPLLLG 312
           GGANQR AP WMLPL+LG
Sbjct: 257 GGANQRAAPDWMLPLILG 274


>UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine
           polyomavirus|Rep: Capsid protein VP2 - Bovine
           polyomavirus (BPyV)
          Length = 353

 Score = 37.9 bits (84), Expect = 0.45
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +1

Query: 250 GSGGGANQRTAPQWMLPLLLG 312
           G+ GGA QR AP W+LPLLLG
Sbjct: 270 GAPGGAEQRVAPDWLLPLLLG 290


>UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Rep:
           Putative VP2 - Crow polyomavirus
          Length = 333

 Score = 35.5 bits (78), Expect = 2.4
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 259 GGANQRTAPQWMLPLLLG 312
           GGA+QR+ P WMLPL+LG
Sbjct: 263 GGAHQRSCPDWMLPLILG 280


>UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|Rep:
           Putative VP2 - Finch polyomavirus
          Length = 354

 Score = 35.5 bits (78), Expect = 2.4
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 259 GGANQRTAPQWMLPLLLG 312
           GGA+QR AP W+LPLLLG
Sbjct: 286 GGAHQRHAPDWLLPLLLG 303


>UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster
           polyomavirus|Rep: Capsid protein VP2 - Hamster
           polyomavirus (HaPyV)
          Length = 345

 Score = 35.1 bits (77), Expect = 3.2
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 259 GGANQRTAPQWMLPLLLG 312
           GGA+QR  P WMLPL+LG
Sbjct: 300 GGAHQRVTPDWMLPLILG 317


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,092,000
Number of Sequences: 1657284
Number of extensions: 8736503
Number of successful extensions: 11519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11519
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 105714451180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)