Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_M03
(963 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.10
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.24
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.98
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.2
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +3
Query: 663 APPNRXXXXPXAPXVXAXXXXHXXXRPPPPAXTXPXPXXPPPTTXAXGXXPPP 821
AP + P P A PPPP P P PP PPP
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +3
Query: 639 PPXXPXXCAPPNRXXXXPXAPXVXAXXXXHXXXRPPPPAXTXPXPXXPPPTTXAXGXXPP 818
PP P APP P P + PP PA P P P + A P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPP---PPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Frame = +1
Query: 634 KXPPXPPXXAPPQTXXXTXPXPXXSXXVXXNTXRXARPXPPXRGLXXXXPXPPXXXXAAX 813
K PP PP PP P P + N+ P PP P PP A
Sbjct: 309 KRPPPPP---PPSRRNRGKP-PIGNGS--SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
Query: 814 PPPP---PXVNXXDPP 852
PPPP P PP
Sbjct: 363 PPPPRSAPSTGRQPPP 378
Score = 29.1 bits (62), Expect = 0.98
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 741 PPPPAXTXPXPXXPPPTTXAXGXXPPPSTXXXXXR--PALAAXTSQXNPPXRXP 896
PPPP PP + PPP + R P L++ + NPP P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 28.7 bits (61), Expect = 1.3
Identities = 35/153 (22%), Positives = 38/153 (24%), Gaps = 20/153 (13%)
Frame = +1
Query: 430 GGGXXXSPKKXPPPXXGRXXXXXXPLP------PPPTXXHAXXXXAXXPXPXXXXXXXXX 591
G G S PPP PLP PPP + P P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 592 XXXXXXXXRGXEXXKXPP--------XPPXXAPPQTXXXTXP-XPXXSXXVXXNTXRXAR 744
G PP PP PP P P + A
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 745 PXPPXRGLXXXXP-----XPPXXXXAAXPPPPP 828
P PP + P PP A PPP P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/87 (22%), Positives = 29/87 (33%)
Frame = +3
Query: 639 PPXXPXXCAPPNRXXXXPXAPXVXAXXXXHXXXRPPPPAXTXPXPXXPPPTTXAXGXXPP 818
PP +PPN P AP V + +PP P + PP
Sbjct: 258 PPSNGTVSSPPNSPPR-PIAP-VSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPP 315
Query: 819 PSTXXXXXRPALAAXTSQXNPPXRXPP 899
P + +P + +S + P PP
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 26.2 bits (55), Expect = 6.9
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +3
Query: 744 PPPAXTXPXPXXPPPTTXAXGXXPPP-STXXXXXRPALAAXTSQXNPPXRXPPXGLSTXT 920
PP + P P PP + + G PPP S+ P PP G ++
Sbjct: 354 PPQGRSAP-PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS-- 410
Query: 921 XXRTXXPXXLTP 956
RT P TP
Sbjct: 411 --RTSTPPVPTP 420
Score = 25.8 bits (54), Expect = 9.1
Identities = 23/88 (26%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Frame = +3
Query: 627 AXXXPPXXPXXCAPPNRXXXXPXAPXVXAXXXXHXXXRPP--PPAXTXPXPXXPPPTTXA 800
A PP P P AP PP PP P P + +
Sbjct: 229 APPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTS 288
Query: 801 XGXXPPPSTXXXXXRPALAAXTSQXNPP 884
PPPS+ ALAA + PP
Sbjct: 289 KPPLPPPSSRVSAA--ALAANKKRPPPP 314
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 724 NTXRXARPXPPXRGLXXXXPXPPXXXXAAXPPPPP 828
N R P PP R P ++ PPPPP
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 467 PPXGXGAXXXXXPSPPPP 520
PP G G+ P PPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 690 PXAPXVXAXXXXHXXXRPPPPAXTXPXPXXPPPTTXAXGXXPPPSTXXXXXRPALAAXTS 869
P P V PPPA P PPP G PPP PA++A S
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP---PAVSAGGS 790
Query: 870 QXNPP 884
+ P
Sbjct: 791 RYYAP 795
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +3
Query: 639 PPXXPXXCAPPNRXXXXPXAPXVXAXXXXHXXXRPPPPAXTXPXPXXPPPTTXAXG 806
PP P P P P PP A P P PPP + G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 464 PPPXGXGAXXXXXPSPPPP 520
PPP G P PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.24
Identities = 24/92 (26%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Frame = +3
Query: 627 AXXXPPXXPXXCAPPNRXXXXPXAPXVXAXXXXHXXXRPPPPAXTXPXP-XXPPPTTXAX 803
A PP P P + AP + PP P+ P P PPP A
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179
Query: 804 GXXPPPSTXXXXXRPALAAXTSQXNPPXRXPP 899
PPS P+L + P PP
Sbjct: 180 PVKSPPSA------PSLPSAVPPMPPKVPPPP 205
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +3
Query: 741 PPPPAXTXPXPXXPPPTTXAXGXXPPPSTXXXXXR--PALAAXTSQXNP-PXRXPPXGLS 911
PP PA P P PP + PPP+ + P+ + S P P + PP LS
Sbjct: 151 PPSPASAPPIPSKAPPIPSS---LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +1
Query: 640 PPXPPXXAPPQTXXXTXPXPXXSXXVXXNTXRXARPXPPXRGLXXXXPXPPXXXXAAXPP 819
PP P PP + P P + + + A+P P + P +A PP
Sbjct: 144 PPRPSI--PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS-----PPSAPSLPSAVPP 196
Query: 820 PPPXV 834
PP V
Sbjct: 197 MPPKV 201
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.98
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = +3
Query: 741 PPPPAXTXPXPXXPPPTTXAXGXXPPP----STXXXXXRPALAAXTSQXNPPXRXPPXGL 908
PP T P PPT+ + PPP S+ P L+ TS PP G
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTS-CTTSTSIPPTGN 404
Query: 909 STXTXXRTXXP 941
ST T P
Sbjct: 405 STTPVTPTVPP 415
Score = 26.6 bits (56), Expect = 5.2
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = +3
Query: 741 PPPPAXTXPXPXXPPPTTXAXGXXPPP---STXXXXXRPALAAXTSQXNPPXRXPPXGLS 911
PP T P PPT+ + PPP ++ L + ++ PP G S
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS 351
Query: 912 TXTXXRTXXP 941
T T P
Sbjct: 352 TTPVTPTVPP 361
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 25/131 (19%), Positives = 36/131 (27%)
Frame = +3
Query: 540 PARXPAGPXXLXPPRGGXXWASPXTAGXRAXXXPPXXPXXCAPPNRXXXXPXAPXVXAXX 719
P P+G + P ++G P PP+ P P V
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK-PSVGVPP 1209
Query: 720 XXHXXXRPPPPAXTXPXPXXPPPTTXAXGXXPPPSTXXXXXRPALAAXTSQXNPPXRXPP 899
PP P + P P PT A P S P + + N
Sbjct: 1210 VPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTS 1269
Query: 900 XGLSTXTXXRT 932
+++ RT
Sbjct: 1270 SSMASAAPART 1280
Score = 27.5 bits (58), Expect = 3.0
Identities = 34/134 (25%), Positives = 43/134 (32%), Gaps = 7/134 (5%)
Frame = +3
Query: 528 TCPXPARXPAGPXXLXPPRGGXXWASPXTAGXRAXXXPPXXPXXCAPPNRXXXXPXAPXV 707
+ P P P+ P G A P A + P P APP P V
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSG---APPVPAP--SGIPPVPKPSVAAPPVPKPSVA-VPPV 1114
Query: 708 XAXXXXHXXXRPPPPAXTXPXPXXPPPT---TXAXGXXPPPSTXXXXXRPALAA----XT 866
A +P A P P PP + A P PS +P++AA
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 867 SQXNPPXRXPPXGL 908
S PP P G+
Sbjct: 1175 SSGIPPVPKPAAGV 1188
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -2
Query: 614 GXGGGPXXPPPGGXKXXGXGXXAXXXXACXXVGGGGRGXXXXXXRPXXGGG 462
G GGG PPPG G G GG G G P GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Frame = +3
Query: 741 PPPPAXTXPXPXXPPPTTXAXGXXP-PPSTXXXXXRPALAAXTSQXN----PPXRXPPXG 905
PPPP+ P PP + + P P+ PA A SQ P PP G
Sbjct: 48 PPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQG 107
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Frame = +1
Query: 640 PPXPPXXAPPQTXXXTXPXPXXSXXV---XXNTXRXARPXPPXRGLXXXXPXPPXXXXAA 810
P PP P Q P P + NT + P L PP +
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPS 280
Query: 811 XPPPPP 828
PP PP
Sbjct: 281 QPPRPP 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,917
Number of Sequences: 5004
Number of extensions: 21963
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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