Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M02
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 21/62 (33%), Positives = 21/62 (33%)
 Frame = -2

Query: 645 PPXXXGGXXPPPXGGGXPXPPXXPPXXXFFXXXXGGGPKXXPPXPXGGGGXFXGXKXPPP 466
           PP       P P     P PP  P           GGP   PP P   G    G   PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIM---------GGPPPPPPPPGVAGA---GPPPPPP 780

Query: 465 PP 460
           PP
Sbjct: 781 PP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
 Frame = +2

Query: 461 GGGGGXFXPXKXPPPPXGXG----GXFLGPPPXXXXKKXXXGGXXGGXGXPPPXGGGXXP 628
           GGG G F      PPP   G    G F G            GG  G  G P   GGG   
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG--- 243

Query: 629 PXXXGG 646
           P   GG
Sbjct: 244 PGGFGG 249



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/55 (32%), Positives = 18/55 (32%)
 Frame = +2

Query: 572 GGXXGGXGXPPPXGGGXXPPXXXGGSXXKXXXXPXAXXXPXTXXXXXXGGFXXGP 736
           GG  GG G PPP  GG       GG              P        GGF  GP
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG-GFEGGPGGFGGGP 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
 Frame = -2

Query: 618 PPPXGGGXPXPPXXPPXXXF-FXXXXGGGPKXXPPXP-----XGGGGXFXGXKXPPPPPX 457
           PPP  G    PP  PP                 PP P               K PPPPP 
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316

Query: 456 XGKK 445
             ++
Sbjct: 317 PSRR 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,433
Number of Sequences: 5004
Number of extensions: 24640
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)