Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_M02
         (907 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.59 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   1.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   7.3  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
 Frame = +1

Query: 484 PXKXXPPPPGXGGXXFGPPXXXPXKKXXXRGXXGGXXXP--PPXGGGXXXPPXXGGXXXX 657
           P +   PP    G   G     P  +   R    G   P  PP   G   P         
Sbjct: 227 PMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNPMGGPRPQISPQNSNL 286

Query: 658 XXXXPXGXXGPXHPXXPXXGG 720
               P G  GP  P  P  GG
Sbjct: 287 SGGMPSGMVGPPRPPMPMQGG 307



 Score = 26.6 bits (56), Expect = 1.0
 Identities = 20/62 (32%), Positives = 21/62 (33%)
 Frame = -2

Query: 645 PPXXXGGXXPPPXGGGXPXPPXXPPXXXFFXXXXGGGPKXXPPXPXGGGGXFXGXKXPPP 466
           PP   G   PP  G     PP  PP         G  P+  P      GG   G   PP 
Sbjct: 248 PPSAQGMQRPPMMG---QPPPIRPPNPM-----GGPRPQISPQNSNLSGGMPSGMVGPPR 299

Query: 465 PP 460
           PP
Sbjct: 300 PP 301



 Score = 24.6 bits (51), Expect = 4.2
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = -2

Query: 642 PXXXGGXXPPPXGGGXPXPPXXPPXXXFFXXXXGGGPKXXPPXPXGGGGXFXGXKXPPPP 463
           P   GG  P P G   P  P  PP         G  P   P  P   G         PPP
Sbjct: 211 PPRPGGMYPQPPGVPMPMRPQMPP-----GAVPGMQPGMQPRPPSAQGMQRPPMMGQPPP 265


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
 Frame = -2

Query: 618 PPPXGGGXPXPPXXPPXXXFFXXXXGGGPKXXPPXP--XGGGG 496
           PPP     P PP  PP         GG     PP P   G GG
Sbjct: 581 PPP--APPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGFGG 621



 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 540 GGPKXXPPXPXGGGGXFXGXKXPPPPP 460
           GGP   PP P  GG          PPP
Sbjct: 525 GGPLGPPPPPPPGGAVLNIPPQFLPPP 551



 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 497 PPPPXGXGGXFLGPPP 544
           PPPP   GG  L  PP
Sbjct: 530 PPPPPPPGGAVLNIPP 545



 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
 Frame = -2

Query: 534 PKXXPPXPXG--GGGXFXGXKXPPPPPXXG 451
           P   PP   G  G     G   PPPPP  G
Sbjct: 508 PNDGPPHGAGYDGRDLTGGPLGPPPPPPPG 537


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 572 GGXXGGXGXPPPXGGG 619
           GG  G  G P P GGG
Sbjct: 213 GGGGGSSGGPGPGGGG 228



 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 543 GGGPKXXPPXPXGGGG 496
           GGG     P P GGGG
Sbjct: 214 GGGGSSGGPGPGGGGG 229


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,065
Number of Sequences: 2352
Number of extensions: 10881
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97987887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)