Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_L24
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.087
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.61
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.61
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.61
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.81
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.087
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 764 PXPPXPPXXXXXXXXXXXXPPPPPPPPP 681
P PP PP PPPPPPPPP
Sbjct: 761 PPPPPPPPGVAGAG-----PPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.61
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = -2
Query: 758 PPXPPXXXXXXXXXXXXPPPPPPPPPXXXXXXXXXXXXXXXXXPPPXPXPXP 603
PP PP P PPP P PPP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +3
Query: 183 PPPXXKXPXP-PXXXXFPXPXPLFGXXGXXPPP 278
PPP P P P P P P+ G PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -2
Query: 764 PXPPXPPXXXXXXXXXXXXPPPPPPPP 684
P P P PPPPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.61
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 707 PPPPPPPPP 681
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.61
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 707 PPPPPPPPP 681
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = -2
Query: 758 PPXPPXXXXXXXXXXXXPPPPPPP--PP 681
P PP PPPPPPP PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.61
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 707 PPPPPPPPP 681
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 1.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 707 PPPPPPPP 684
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 1.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 704 PPPPPPPP 681
PPPPPP P
Sbjct: 907 PPPPPPLP 914
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -2
Query: 707 PPPPPPPPPXXXXXXXXXXXXXXXXXPPPXPXP 609
PPPPPPP PPP P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 707 PPPPPPPP 684
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 704 PPPPPPPP 681
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 764 PXPPXPPXXXXXXXXXXXXPPPPPPP 687
P PP PP PPPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQ----PPPPPPP 30
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 707 PPPPPPPP 684
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 704 PPPPPPPP 681
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -2
Query: 764 PXPPXPPXXXXXXXXXXXXPPPPPP 690
P P PP PPPPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 707 PPPPPPPP 684
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 704 PPPPPPPP 681
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 707 PPPPPPPP 684
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 704 PPPPPPPP 681
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Frame = -2
Query: 764 PXPPXPPXXXXXXXXXXXXP--PPPPPPPP 681
P PP PP P PP PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Frame = -2
Query: 758 PPXPPXXXXXXXXXXXXPPPPP---PPPP 681
PP P PPPPP PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,381
Number of Sequences: 5004
Number of extensions: 19897
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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