Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L22
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    30   0.42 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.55 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.73 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = -1

Query: 589 PPXXGENXGPPPXPXXXGXKPXGXGXGAKXXXPPXXGGGGGXXPKXPPPXP 437
           PP       P P P      P     G     PP  G  G   P  PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +1

Query: 739 PPVPXLXXXXPPPXXLSPXXAPXPGPPPXGXPLXPRXXXXPGSXSPP 879
           PP P +    P P   +P   P P P   G P  P      G+  PP
Sbjct: 734 PPPPAVIVPTPAP---APIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
 Frame = +2

Query: 770 PXPGXXPRXXPPPRX----PPPXGXPXPXGEXXXRVPXPPPFSXXGXXXXXFXPPP 925
           P P   P   PPP      PPP   P          P PPP +        + P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = -1

Query: 619 PPRXGGPXXXPPXXGENXGPPPXPXXXGXKPXGXGXGAKXXXPPXXGGGG 470
           P     P   PP      GPPP P   G    G G       PP    GG
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGV--AGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 739 PPVPXLXXXXPPPXXLSPXXAPXPGPPP 822
           PP P +    PPP       A  P PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +2

Query: 776 PGXXPRXXPPPRXPPPXGXPXPXGEXXXRVPXPPPFSXXGXXXXXFXPPP 925
           P   P    P   P P   P P        P PPP    G       PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 19/71 (26%), Positives = 21/71 (29%)
 Frame = +3

Query: 729 PXXXPGPXVXGXGXPXXGXXPGXXPXPGXPPXXGPPXPXXXXXXGFXXPPPFXXGGXGXF 908
           P   P P       P  G  P   P PG     GPP P          PPP    G   +
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGV-AGAGPPPP--------PPPPPAVSAGGSRY 792

Query: 909 XSXPPPXXXXP 941
            +  P     P
Sbjct: 793 YAPAPQAEPEP 803


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +1

Query: 733 GXPPVPXLXXXXPPPXXLSPXXAPXPGPPPX--GXPLXPRXXXXPGSXSPP 879
           G P +P L    PP   + P  A  PG P    G P  P     PG+ +PP
Sbjct: 510 GAPGMPNLNMSQPP--MVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP 558


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
 Frame = +1

Query: 604  PPXAGAPXXXXXXXGXPXXGXPPPXXXXXXXXXXXXXXXXXXXGXPPVPXLXXXXPP--- 774
            P  +GAP         P    P                     G PPVP      PP   
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193

Query: 775  PXXLSPXXAPXPGPPPXGXPLXPRXXXXPGSXSPPL 882
            P    P   P  G PP   P        P +  PP+
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +1

Query: 733  GXPPVPXLXXXXPPPXXLSPXXAPXPGPPPXGXPLXPRXXXXPGSXSPPL 882
            G PPVP      PP     P  A  P P P G P  P+    P   +PP+
Sbjct: 1090 GIPPVPKPSVAAPPVP--KPSVAVPPVPAPSGAPPVPK----PSVAAPPV 1133



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +1

Query: 739  PPVPXLXXXXPPPXXLSPXXAPXPGPPPXGXPLXPRXXXXPGSXSPPL 882
            PPVP      P P    P  A  P P P G P  P+    P   +PP+
Sbjct: 1112 PPVPAPSGAPPVP---KPSVAAPPVPVPSGAPPVPK----PSVAAPPV 1152



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
 Frame = +1

Query: 739  PPVPXLXXXXPPPXXLS----PXXAPXPGPP---PXGXPLXPRXXXXPGSXSPPL 882
            PPVP L    PP    S    P   P   PP   P   P  P+      S  PP+
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 24/74 (32%), Positives = 24/74 (32%)
 Frame = -1

Query: 946 GXGXKXXGGGXEXXXPXPPXXKGGGXXNPXXXLXXGXGGPXXGGXPGXGXXPGXXPXXGX 767
           G G    GGG     P P    G G          G GG   GG PG G   G     G 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG--FGGGPG-GFEGGPGGFGGG 243

Query: 766 PXPXTXGPGXXXGG 725
           P     G G   GG
Sbjct: 244 PGGFGGGLGGFGGG 257


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/77 (25%), Positives = 21/77 (27%)
 Frame = +1

Query: 604 PPXAGAPXXXXXXXGXPXXGXPPPXXXXXXXXXXXXXXXXXXXGXPPVPXLXXXXPPPXX 783
           PP A AP         P    PPP                   G    P +     P   
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQA 232

Query: 784 LSPXXAPXPGPPPXGXP 834
             P  AP P PPP   P
Sbjct: 233 -DPLPAPPPPPPPTLPP 248


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 733 GXPPVPXLXXXXPPPXXLSPXXAPXPGPPP 822
           G PP P      PPP    P   P P PPP
Sbjct: 7   GNPPPP------PPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 803 PPRXPPPXGXPXPXGEXXXRVPXPPP 880
           PP  PPP   P P  E   + P PPP
Sbjct: 5   PPGNPPPP-PPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 776 PGXXPRXXPPPRXPPPXGXPXP 841
           PG  P   PPP   PP   P P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPP 27


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +1

Query: 748  PXLXXXXPPPXXLSPXXAPXPGPPPXGXPLXPRXXXXPGSXSP 876
            P +    PPP  +S    P   P P G P  P     P S +P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP-PPPLPASSAP 1741



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +1

Query: 739  PPVPXLXXXXPPPXXLSPXXAPXPGPPPXGXPLXPRXXXXPGSXSPPL 882
            PPV       P     +P   P   PPP   P  P     P +  PPL
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP--PMPAGPPSAPPPPL 1735


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +1

Query: 739 PPVPXLXXXXPPPXXLSPXXAPXPGPPPXGXPLXPRXXXXPGSXSP 876
           P +P      PP    +P   P P   P   PL P     P + +P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 468 AXXQXPPPPXPXXXGKRXKXPPGGG 394
           A  + PPPP P     R K P G G
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNG 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,537
Number of Sequences: 5004
Number of extensions: 31272
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)