Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L21
         (1065 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.039
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.039
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +2

Query: 680 PPPXXTXXKKTQRXPXPETXAPXXPHXXXPPPXPPPPXKHXTXXXXTXPPNP 835
           PPP       T   P P    P  P    PPP PPPP           PP P
Sbjct: 733 PPPPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
 Frame = +2

Query: 683  PPXXTXXKKTQRXPXPETXAPXXPHXXXPPPXP-----PPPXKHXTXXXXTXPPNPXPT 844
            PP      K    P P   AP  P     PP P     PP  K  +      PP P P+
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
 Frame = +1

Query: 607  PXXTPPPP-PXKTXXXPXXXEGXXX-PPPXKXXXKKNTAXXXPXNXSPXXXPXXXXPPXP 780
            P   PP P P  T   P    G    PPP      +  +   P    P   P    PP P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI-PPVP 1095

Query: 781  XPPXKA 798
             P   A
Sbjct: 1096 KPSVAA 1101


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/92 (22%), Positives = 24/92 (26%)
 Frame = +1

Query: 523 PPXPXPXXTQXXXXXXXXXXXXXXXXXPPXXTPPPPPXKTXXXPXXXEGXXXPPPXKXXX 702
           PP P P   +                 PP   PPP        P   +G   PPP     
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP--PPPRSNAAGSIPLPPQGRSAPPPPPPRS 368

Query: 703 KKNTAXXXPXNXSPXXXPXXXXPPXPXPPXKA 798
             +T    P   S         PP   P   A
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 604 PPXXTPPPPPXKTXXXPXXXEGXXXPPPXKXXXKKN 711
           PP   PPPPP      P   +    PPP     +KN
Sbjct: 5   PPGNPPPPPPPPGFEPP--SQPPPPPPPGYVKKRKN 38


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
 Frame = +2

Query: 686  PXXTXXKKTQRXPXPETXAPXXP----HXXXPPPXPPPPXKHXTXXXXTXPPNPXPTXPN 853
            P  T   + Q    P+  AP  P        PP  PP P    +      P +  P+ PN
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 722 PXPETXAPXXPHXXXPPPXPPPP 790
           P     A   P    PPP PPPP
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPP 196


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
 Frame = +2

Query: 683 PPXXTXXKKTQRXPXPETXAPXXPHXXXPPPXP---PPPXKHXTXXXXTXPPNPXPTXP 850
           PP        Q    P T AP  P    PPP P   PP          + PP   P  P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAP--PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.126    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,680
Number of Sequences: 5004
Number of extensions: 18574
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)