Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L21
         (1065 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 767  PPPXPPPP 790
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 752  PHXXXPPPXPPPPXKH 799
            P    P P PPPP  H
Sbjct: 1852 PVSGSPEPPPPPPRNH 1867


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 604 PPXXTPPPPP 633
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 12/57 (21%), Positives = 15/57 (26%)
 Frame = +2

Query: 320 PHEXXKXXXPAEAPKAXQXXXXXPXTXPPXXXXXQXPXXXPNKXXPXXXXPXXPXXP 490
           PH   +    +EA          P   PP     + P   P    P       P  P
Sbjct: 84  PHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.304    0.126    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,699
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35547795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)