Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L18
         (940 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.006
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    31   0.038
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    28   0.47 

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect(2) = 0.006
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +3

Query: 516 PXPXPPPXRGGXXVPGGGGXPXPXXGGKRXPPXP 617
           P P PPP  G    P  GG P     G R PP P
Sbjct: 583 PAPPPPPPMGPPPSPLAGG-PLGGPAGSR-PPLP 614



 Score = 25.8 bits (54), Expect(2) = 0.006
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 477 PPPPGGGXXVFXXPXPXPPP 536
           PPPP GG  +   P   PPP
Sbjct: 532 PPPPPGGAVLNIPPQFLPPP 551


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 31.5 bits (68), Expect = 0.038
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 601 LFPPXXGXGXPPPPGTXXPPLXGGGKGXGXXKTXXPPPGGGG 476
           L PP  G    P P +   P  GGG+  G   T   P GGGG
Sbjct: 493 LQPPPGGRPNAPNPSSAVTP--GGGRAEGDKVTFQIPNGGGG 532



 Score = 24.2 bits (50), Expect = 5.8
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = -1

Query: 595 PPXXGXGXPPPPGTXXPPLXGGGKGXGXXKTXXPP-PGG 482
           P     G PP P    PP   G    G      PP PGG
Sbjct: 178 PARPNPGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGG 216


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 562 PGTXXPPLXGGGKGXGXXKTXXPPPGGGG 476
           PG       GG  G G   +  P PGGGG
Sbjct: 200 PGAGGGGSGGGAPGGGGGSSGGPGPGGGG 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,045
Number of Sequences: 2352
Number of extensions: 8349
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 102535848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)