Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L14
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   3.4  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    26   6.2  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   8.2  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    26   8.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   8.2  

>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 23.8 bits (49), Expect(2) = 3.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 367 AICLYYVYYRNIPSCTKH 420
           A+CL  +++RN  +C K+
Sbjct: 75  AVCLMNIFFRNSENCFKY 92



 Score = 21.8 bits (44), Expect(2) = 3.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 178 LPTVVVIFLLICVYVYIKTRPSTMHD 255
           L  + ++FLL+  Y++     + MHD
Sbjct: 27  LSLIGIVFLLVLSYLFSIEAETLMHD 52


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 345 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 226
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 345 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 226
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 449 IEIKTKKNMFFFIRNLSVIYSTL 517
           ++IKTKKN FFFI   S++++ +
Sbjct: 67  MDIKTKKN-FFFIDGFSMLFAPI 88


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 145 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 240
           +K+ K +  +      + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,852
Number of Sequences: 5004
Number of extensions: 38444
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)