Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L14
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical p...    28   7.7  

>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 FAKMRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHD 255
           F    K I  +   T+  IF+L+C Y++ K   +  H+
Sbjct: 224 FTASEKNIFLLSFDTIYTIFILVCPYLHYKNNTTWQHE 261


>Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical
           protein F17A2.13 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 369 STKSLTCYHIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRR 241
           S++S  C    S S+ EKP PE    V  +Y  KL    VH +
Sbjct: 185 SSESSHCSASSSLSKTEKPEPENSNFVNELYYCKLARSQVHHK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,500,272
Number of Sequences: 27780
Number of extensions: 218553
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)