Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_L12
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 118 9e-28
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.39
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 29 1.2
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.6
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 6.3
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 6.3
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 6.3
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.3
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 8.3
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 118 bits (285), Expect = 9e-28
Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Frame = +3
Query: 291 VEKHLELEFDLGSLLASDTNDLDIKTLK-TNKDSYLLALTRDNAQLLLNKVWELPTERIE 467
+E + L+FDLG++ A D + LD L + K+S+L +L+RDN Q L+NK+ LP ER
Sbjct: 5 IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTS 64
Query: 468 EAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFA-XXXXXXXXXXXXLQWDEQLQKWVPLY 644
+ ++++LP+ T LPRAKP+P PKP TKWQ FA L +DE +WVP +
Sbjct: 65 DGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVPKW 124
Query: 645 GFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEK 758
G+K E E WL+E + +T + +K ++
Sbjct: 125 GYKGKNKELETQWLVEEGEKEKKLTSKQVRNTSKKIKR 162
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 754 KRLQRMNYRDLRISLEPKRLNTKGGASXS 840
KRLQ + Y LR SL+ +L K GAS S
Sbjct: 766 KRLQELTYEYLRRSLQQPKLKAKKGASSS 794
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 751 DFSPAFFSYISVIGSKFCGTSISQFFSFSAAVFLKPYKGT 632
+F+PA+F YIS + T++++ F F P GT
Sbjct: 1725 NFAPAYFDYISKVFFHELPTALTKIFGFYRVDIRNPTTGT 1764
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 739 AFFSYISVIGSK--FCGTSISQFFSFSAAVFL 650
A+FSY V+ S FCG ++ ++ F +FL
Sbjct: 74 AYFSYFRVLFSSPSFCGNTLYTYYGFDNPIFL 105
>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 456 ERIEEAIVVRLPQPTTILPRAKPVPVPK 539
ER++E IV+ +P LP A P+P+ K
Sbjct: 72 ERLKEWIVLAKVRPEIPLPPAAPIPMKK 99
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 645 GFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 800
G KK A K E +L+ +D +GE + +A+N LQ +K + R
Sbjct: 360 GAKKPAIRNAKKMSNEKDDSLNSQSD---SASGEFIKTIARNNLQEIKQVER 408
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 6.3
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 621 LQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 800
L KW P K+T K +E+ L P T+ + AG+K AKN Q+ + +
Sbjct: 162 LLKWAPQLEVKQTLDRK----FLEL---LGPKTEQ-DAAAGKKKGAKAKNSKQKTVDSGK 213
Query: 801 AKKVK 815
AK+ K
Sbjct: 214 AKEQK 218
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -2
Query: 390 MNLCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHLQYPLLSEH 211
+N CL +CP R + +L LI + F P V + + + L+ P+LS++
Sbjct: 456 LNRCLQLTDVCPPRASLETLCSLCVTLINDTFEP--VRMATTNVLATLVQIFSQPVLSKY 513
Query: 210 FL 205
+
Sbjct: 514 IV 515
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 708 DPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 800
DP D Y ++A EK+E++A NE Q++ + +
Sbjct: 171 DPFFDSYLEQAFEKAERLA-NEQQKISKVEK 200
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 381 CLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLL 283
CLS+ +LC LCQ+ R L P + LL
Sbjct: 469 CLSAFYLCMPSLCQKSYGTERRYLCPPIVLYLL 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,748
Number of Sequences: 5004
Number of extensions: 70299
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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