Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L11
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    31   0.17 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    28   2.0  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   4.7  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   8.2  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 361 REAIFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKSTCS*ANHNKY 191
           RE I +A SS+ +    Y FS+  +   +  +LN+ KI ++ ACL   C   N ++Y
Sbjct: 752 REGIIYATSSDDT----YTFSRSIYVKAMRDLLNEAKIQIMHACLIDVCL-KNRDRY 803


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -2

Query: 503 RYVQHIPHFRKSXXEVVFXSDWRKLIXNXSILLALDHNSIQFFIKTD 363
           RYV +I HF +S    +  SD   +  N ++L  L++++I+  + ++
Sbjct: 602 RYVDNISHFAQSLLYTLLISDRYGINTNQALLCYLENSTIKNLVASN 648


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 352 IFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKST 218
           +F   + E  S+I + FSKH F ++ + I+N  K  ++S  L  T
Sbjct: 486 VFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVSLSLLFT 530


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 238 KSIVFCPYSKYPSNSLRNRVWRSRIGL*SSLQKIVRKRSP 357
           KSI+ C ++ +    LR+ +WR    L S  ++I   ++P
Sbjct: 207 KSIICCLFTPFSYAILRSYIWRFAALLTSCCRRIAYTKTP 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,752
Number of Sequences: 5004
Number of extensions: 37428
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)