Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L09
         (903 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    60   6e-08
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    59   1e-07
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    55   2e-06
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    46   0.001
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    45   0.003
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.038
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   2.5  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 39/93 (41%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +1

Query: 625 FSIGSAPLTSIXXFDAQVTGGEXRQDYXDSGVSPWXXPRCAXXXXXXXXTGYXPPFSPSX 804
           FSIGSAPLTSI   DAQV GGE RQDY D+   P   P CA            PPFS   
Sbjct: 16  FSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFS--- 72

Query: 805 XRDAXP--IXHPLXXXXXXXXXRPXLGCVPNPP 897
            R+A    I H +          P      NPP
Sbjct: 73  LREAWRFLIAHAVGISVRCRSFAPSWAVCTNPP 105


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 41/97 (42%), Positives = 48/97 (49%)
 Frame = +1

Query: 457 SLTRCXRXXGCGERXQAHSKAVIRLSTESGDNAGKNM*SKXXQEGXXP*XGRVAGXFSIG 636
           SLTR  R  GCGER +          T+   N  ++      +E   P   R    FSIG
Sbjct: 41  SLTRYARSFGCGERYRL---------TDGDGNFLEDTRKTLSKEEIRPRRSR----FSIG 87

Query: 637 SAPLTSIXXFDAQVTGGEXRQDYXDSGVSPWXXPRCA 747
           SAPLTSI   DAQ++GGE RQDY D    P   P CA
Sbjct: 88  SAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCA 124


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 26/41 (63%), Positives = 29/41 (70%)
 Frame = +1

Query: 625 FSIGSAPLTSIXXFDAQVTGGEXRQDYXDSGVSPWXXPRCA 747
           FSIGSAPLTSI   DAQ++GGE RQDY D+   P   P CA
Sbjct: 52  FSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCA 92


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 505 AHSKAVIRLSTESGDNAGKNM 567
           AHSKAVIRLSTESGDNAGKNM
Sbjct: 39  AHSKAVIRLSTESGDNAGKNM 59


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = -3

Query: 574 LITCSFLRYPRILWITVLPPLSE 506
           L+TCSF  YP ILWITVLPPLSE
Sbjct: 24  LLTCSFRLYPLILWITVLPPLSE 46


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.1 bits (92), Expect = 0.038
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 397 NPPTRGERRXAYWALFRFL 453
           N PTRGERR AYWALFRFL
Sbjct: 29  NRPTRGERRFAYWALFRFL 47


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +3

Query: 192 PDMIRYIDEXGQXXTRMQ 245
           PDMIRYIDE GQ  TRMQ
Sbjct: 347 PDMIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,739,733
Number of Sequences: 1657284
Number of extensions: 7461480
Number of successful extensions: 9744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9738
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)