Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L07
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   168   8e-43
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   168   8e-43
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   1.2  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.6  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   8.3  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  168 bits (409), Expect = 8e-43
 Identities = 79/163 (48%), Positives = 105/163 (64%)
 Frame = +2

Query: 221 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 400
           Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AA
Sbjct: 39  QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98

Query: 401 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 580
           Y+TG                              E +++GP  F+ +LDVGL RT+TG+R
Sbjct: 99  YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158

Query: 581 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 709
           VFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +1

Query: 106 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 234
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL    + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = +3

Query: 714 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIR 851
           HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIR 248


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  168 bits (409), Expect = 8e-43
 Identities = 79/163 (48%), Positives = 105/163 (64%)
 Frame = +2

Query: 221 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 400
           Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AA
Sbjct: 39  QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98

Query: 401 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 580
           Y+TG                              E +++GP  F+ +LDVGL RT+TG+R
Sbjct: 99  YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158

Query: 581 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 709
           VFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +1

Query: 106 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 234
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL    + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = +3

Query: 714 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIR 851
           HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIR 248


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 615 ASMFLIPS--KDSLAMMQNPKSSMLKYTGLTSLVLHVAEYMRSLEQDDEDSFKRQFSKYI 788
           +++F+ P   K  L  +QNPKS       L   VL +  Y+ S+ ++      R+F   I
Sbjct: 274 STLFVTPLAIKKLLQYLQNPKSDEGNSPFLWVFVLLIGPYLASVVKELYVHVSRRFMLRI 333

Query: 789 KLGVTADAIEAIYKK 833
           K  +T    + IYKK
Sbjct: 334 KAAIT----QMIYKK 344


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 437 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 345
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 796 ESLQMLL--KPSTRKPMKPSVRDPSPXXXEL 882
           ESL  +L  K    KP KP+V DPS    E+
Sbjct: 34  ESLPSILGEKSEVSKPFKPAVTDPSNAKKEI 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,550,809
Number of Sequences: 5004
Number of extensions: 72669
Number of successful extensions: 205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)