Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L05
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    58   2e-09
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.4  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   6.4  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 27/58 (46%), Positives = 38/58 (65%)
 Frame = +2

Query: 179 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFKSQE 352
           +LRV K+ GG  SKLSKI+  RK IAR+  V ++  ++  R  YKNKKY PL  + ++
Sbjct: 29  SLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKK 86



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = +3

Query: 342 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 461
           R KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 83  RQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 473 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 387
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 847 PXXXTPPPPXXGXXXXXXKXXPXXPPGXXKKK 752
           P    PPPP         +  P  PPG  KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -1

Query: 170 LSLAPQAV*IAPFYLLSLNSEHFTLPILTGH-------VLFETNFKKNQNLKEF 30
           ++L P+A  +A FY   L ++H   P+   +       V  E NF  N N+KEF
Sbjct: 225 VNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRDFLKVCDECNF--NHNIKEF 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,854
Number of Sequences: 5004
Number of extensions: 26463
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)