Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L05
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    61   1e-09
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    31   0.95 

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 31/57 (54%), Positives = 38/57 (66%)
 Frame = +2

Query: 182 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFKSQE 352
           LRVAKVTGG  +KLSKI+VVR +IARV  V  QK +  LR  YK K   PL  + ++
Sbjct: 31  LRVAKVTGGAPNKLSKIKVVRTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKK 87



 Score = 32.3 bits (70), Expect = 0.55
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 18/58 (31%)
 Frame = +3

Query: 342 RAKKTRAMRKALTKH------------------EAKIKTRKEIRKKSLFPPRVYAVKA 461
           R KKTRA+R+ LTKH                  +  +KT +E +++  FP R YA+KA
Sbjct: 84  RPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +2

Query: 182 LRVAKVTGGVASKLSKIRVVRKAIARVY 265
           LRVA+VTGG  +KLS I+ VR A+   Y
Sbjct: 138 LRVARVTGGAPNKLSNIK-VRTALREAY 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,651
Number of Sequences: 37544
Number of extensions: 193028
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)