Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L04
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   228   9e-61
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   228   9e-61
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.6  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   4.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  228 bits (557), Expect = 9e-61
 Identities = 105/201 (52%), Positives = 136/201 (67%)
 Frame = +1

Query: 103 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 282
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 283 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 462
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 463 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 642
                       E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 643 PGYDAESKKFNAEVHRAHIFG 705
           PG+D E+++ + E  R +I+G
Sbjct: 181 PGFDIETEELDDETLRKYIYG 201



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +2

Query: 710 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIY 823
           HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIY 240


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  228 bits (557), Expect = 9e-61
 Identities = 105/201 (52%), Positives = 136/201 (67%)
 Frame = +1

Query: 103 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 282
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 283 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 462
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 463 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 642
                       E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 643 PGYDAESKKFNAEVHRAHIFG 705
           PG+D E+++ + E  R +I+G
Sbjct: 181 PGFDIETEELDDETLRKYIYG 201



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +2

Query: 710 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIY 823
           HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIY 240


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 433 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 341
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 611 ASMFLIPS--KDSLAMMQNPKSSMLKYTGLTSLVLHVAEYMRSLEQDDEDSFKRQFSKYI 784
           +++F+ P   K  L  +QNPKS       L   VL +  Y+ S+ ++      R+F   I
Sbjct: 274 STLFVTPLAIKKLLQYLQNPKSDEGNSPFLWVFVLLIGPYLASVVKELYVHVSRRFMLRI 333

Query: 785 KLGVT 799
           K  +T
Sbjct: 334 KAAIT 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,824
Number of Sequences: 5004
Number of extensions: 69592
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)