Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L04
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   229   2e-60
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   227   1e-59
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156...    28   8.7  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  229 bits (560), Expect = 2e-60
 Identities = 111/200 (55%), Positives = 136/200 (68%)
 Frame = +1

Query: 106 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 285
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 286 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 465
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG                   
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119

Query: 466 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 645
                  +Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 120 NVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178

Query: 646 GYDAESKKFNAEVHRAHIFG 705
           G+  + K+ ++++HR +I+G
Sbjct: 179 GFKKDEKQLDSDIHRKYIYG 198



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 18/40 (45%), Positives = 31/40 (77%)
 Frame = +2

Query: 710 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYXK 829
           HVA+YMRS+ +++ + F+  FS+Y+K G+ AD +E++Y K
Sbjct: 200 HVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKK 239


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  227 bits (554), Expect = 1e-59
 Identities = 110/200 (55%), Positives = 135/200 (67%)
 Frame = +1

Query: 106 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 285
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 286 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 465
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG                   
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119

Query: 466 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 645
                  +Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 120 NIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178

Query: 646 GYDAESKKFNAEVHRAHIFG 705
           G+  + K+ ++++HR +I+G
Sbjct: 179 GFKKDEKQLDSDIHRKYIYG 198



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 19/40 (47%), Positives = 31/40 (77%)
 Frame = +2

Query: 710 HVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYXK 829
           HVA+YMRS+ +++ + F+  FS+Y+K G+ AD +EA+Y K
Sbjct: 200 HVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKK 239


>01_01_0182 -
           1561779-1561873,1561977-1562050,1562140-1562207,
           1562279-1562371,1562521-1562604,1562697-1562752,
           1562843-1562950,1563051-1563225,1563237-1563422
          Length = 312

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 294 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 115
           HL  Y +  +  ++  FR       +NN  +TS ++++  T+P   Y +   +LF+ H  
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170

Query: 114 NESH 103
            + H
Sbjct: 171 GDIH 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,430,148
Number of Sequences: 37544
Number of extensions: 439776
Number of successful extensions: 993
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)